; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0001144 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001144
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:19498037..19498288
RNA-Seq ExpressionIVF0001144
SyntenyIVF0001144
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051639.1 uncharacterized protein E6C27_scaffold47592G00010 [Cucumis melo var. makuwa]7.95e-3066.22Show/hide
Query:  LSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV
        +  + QVQH+PPALTEEF+LQ+ PE VLG+RWN +I  NEWL+KWK L +SEATW  V  MNQQ+PSFHLE+KV
Subjt:  LSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV

KAA0054183.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]8.13e-3071.05Show/hide
Query:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV
        +KL  + QVQH+PPALTEEF+LQ+ PE VLG+RWN EI  NEWL+KWK L +SEATW SVY MNQQ+PSFHLE+KV
Subjt:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV

KAA0056355.1 Cleavage stimulation factor subunit 1 [Cucumis melo var. makuwa]1.09e-52100Show/hide
Query:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR
        MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR
Subjt:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR

XP_031737236.1 uncharacterized protein LOC116402184 [Cucumis sativus]7.64e-3167.9Show/hide
Query:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR
        +KL   Q VQH  P LTEEF+LQL PETVLGVRWNRE+ GNEWL+KWK L +SE TW SV+ MNQQFP FHLE+KV    R
Subjt:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR

XP_031745420.1 uncharacterized protein LOC116405633 [Cucumis sativus]3.03e-3067.9Show/hide
Query:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR
        +KL   Q VQH  P LTEEF+LQL PETVLGVRWNRE+ GNEWL+KWK L +SE TW SV+ MNQQFP FHLE+KV    R
Subjt:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR

TrEMBL top hitse value%identityAlignment
A0A5A7UG23 Chromo domain-containing protein7.9e-2368Show/hide
Query:  KLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV
        KL Q QQ Q + P LT+EF+LQL PETVLG+RW++E+  NEWL+KWK L  +EATW SVYLMNQQFP FHLE+KV
Subjt:  KLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV

A0A5D3BR63 Ty3-gypsy retrotransposon protein4.2e-2467.9Show/hide
Query:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR
        +KL + Q VQH  P LT+EF+LQL PET+LG+RWN+E+  NEWLVKWK L +SEATW SVYLMNQQFPSFHLE KV    R
Subjt:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR

A0A5D3CUI1 Transposon Ty3-G Gag-Pol polyprotein6.5e-2571.05Show/hide
Query:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV
        +KL  + QVQH+PPALTEEF+LQ+ PE VLG+RWN EI  NEWL+KWK L +SEATW SVY MNQQ+PSFHLE+KV
Subjt:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV

A0A5D3DUN8 Transposon Ty3-G Gag-Pol polyprotein4.6e-2367.11Show/hide
Query:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV
        +KL  + QVQH+PPALTEEF+LQ+ PE VLG+RWN +I  NEWL+KWK L +SEATW  V  MNQQ+PSFHLE+KV
Subjt:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKV

A0A5D3E0X1 Cleavage stimulation factor subunit 12.7e-39100Show/hide
Query:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR
        MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR
Subjt:  MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTGAGCCAAACTCAGCAAGTCCAGCACCTTCCTCCAGCTTTAACAGAAGAATTTAAGTTACAATTGAGACCAGAAACTGTGTTAGGAGTGAGATGGAACAGAGA
AATCGCAGGCAACGAATGGTTGGTGAAATGGAAGAAACTACTGAACAGTGAGGCCACTTGGGGGTCGGTATATCTCATGAATCAGCAATTCCCTTCTTTCCACCTTGAGA
ACAAGGTGCAACGAGCCGACCGGTATTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTTGAGCCAAACTCAGCAAGTCCAGCACCTTCCTCCAGCTTTAACAGAAGAATTTAAGTTACAATTGAGACCAGAAACTGTGTTAGGAGTGAGATGGAACAGAGA
AATCGCAGGCAACGAATGGTTGGTGAAATGGAAGAAACTACTGAACAGTGAGGCCACTTGGGGGTCGGTATATCTCATGAATCAGCAATTCCCTTCTTTCCACCTTGAGA
ACAAGGTGCAACGAGCCGACCGGTATTGTTAA
Protein sequenceShow/hide protein sequence
MKLSQTQQVQHLPPALTEEFKLQLRPETVLGVRWNREIAGNEWLVKWKKLLNSEATWGSVYLMNQQFPSFHLENKVQRADRYC