; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0001150 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001150
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA polymerase
Genome locationtig00000607_ERROPOS641385+:3669..4737
RNA-Seq ExpressionIVF0001150
SyntenyIVF0001150
Gene Ontology termsGO:0006287 - base-excision repair, gap-filling (biological process)
GO:0006297 - nucleotide-excision repair, DNA gap filling (biological process)
GO:0045004 - DNA replication proofreading (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0008296 - 3'-5'-exodeoxyribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR006133 - DNA-directed DNA polymerase, family B, exonuclease domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025206.1 DNA polymerase delta catalytic subunit [Cucumis melo var. makuwa]1.10e-82100Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

KAE8647435.1 hypothetical protein Csa_002832 [Cucumis sativus]3.18e-8097.01Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFHRTLEARMKEVNRN+KAP+FVRRIELVQRRSIMYYQQQT QSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CNVVGGNWIEVPVGKYKKTVRS SYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

KAG7027164.1 DNA polymerase delta catalytic subunit, partial [Cucurbita argyrosperma subsp. argyrosperma]9.74e-8381.93Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFH+TLEARMKE+NRNSKAPSFVRRIELVQ+RSIMYYQQQTSQSFLKIVVALPTMV SCRGILDRGIQI+GFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLYPLVPEVFVSVSVALTFLIEIPLLDRPYNLNNY
        CNVVGGNWIEVPVGKYKKTVR+ SYCQLEFDCLYP   +V V + V     I++ LLD  + L+ +
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLYPLVPEVFVSVSVALTFLIEIPLLDRPYNLNNY

XP_004143345.1 DNA polymerase delta catalytic subunit [Cucumis sativus]2.82e-8097.01Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFHRTLEARMKEVNRN+KAP+FVRRIELVQRRSIMYYQQQT QSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CNVVGGNWIEVPVGKYKKTVRS SYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

XP_008462637.1 PREDICTED: DNA polymerase delta catalytic subunit [Cucumis melo]7.98e-83100Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

TrEMBL top hitse value%identityAlignment
A0A0A0KIW2 DNA polymerase5.9e-6897.01Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFHRTLEARMKEVNRN+KAP+FVRRIELVQRRSIMYYQQQT QSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CNVVGGNWIEVPVGKYKKTVRS SYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

A0A1S3CHX8 DNA polymerase4.8e-70100Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

A0A5A7SH90 DNA polymerase4.8e-70100Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

A0A5D3C804 DNA polymerase5.9e-6899.25Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCR ILDRGIQIEGFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

A0A6J1KPK3 DNA polymerase6.5e-6794.78Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDISLFH+TLEARMKE+NRNSKAPSFVRRIELVQ+RSIMYYQQQTSQSFLKIVVALPTMV SCRGILDRGIQI+GFGMKSFMTYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CNVVGGNWIEVPVGKYKKTVR+ SYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

SwissProt top hitse value%identityAlignment
O48901 DNA polymerase delta catalytic subunit2.5e-6081.34Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDIS FH+TLE RM+E NRNS    FVRRIE+VQRRSIMYYQQ  SQ FLKIVVALPTMV SCRGILDRGIQ++G GMKSF+TYESNVLFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CN+VGGNWI +P GKYKKT +S SYCQLEFDCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

O54747 DNA polymerase delta catalytic subunit6.8e-2138.97Show/hide
Query:  GPDDISLFHRTLEARMKEVNRNSKAPS--FVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMI
        G + +S   R L A +    R  K  S   V  IEL  R S+  Y       FL+I +ALP ++   R +L++GI++ G G  SF  YE+NV F +RFM+
Subjt:  GPDDISLFHRTLEARMKEVNRNSKAPS--FVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMI

Query:  DCNVVGGNWIEVPVGKY-KKTVRSSSYCQLEFDCLY
        D ++VG NW+E+P GKY ++  + ++ CQLE D L+
Subjt:  DCNVVGGNWIEVPVGKY-KKTVRSSSYCQLEFDCLY

P97283 DNA polymerase delta catalytic subunit8.8e-2139.71Show/hide
Query:  GPDDISLFHRTLEARMKEVNRNSKAPS--FVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMI
        G + +S   R L   +    R  K  S   V  IEL  R S+  Y       FL+I +ALP +V   R +L++GI++ G G  SF  YE+NV F +RFM+
Subjt:  GPDDISLFHRTLEARMKEVNRNSKAPS--FVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMI

Query:  DCNVVGGNWIEVPVGKYK-KTVRSSSYCQLEFDCLY
        D ++VG NW+E+P GKY  +T + ++ CQLE D L+
Subjt:  DCNVVGGNWIEVPVGKYK-KTVRSSSYCQLEFDCLY

Q9LRE6 DNA polymerase delta catalytic subunit2.2e-5676.87Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDIS FH+TLE RMK+ NRNS  P FV+RIELVQ+++IM+YQ Q SQ FLKIVVALPTMV SCRGIL+RGI IEG G KSF+TYESN+LFALRFMID
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        CN+VGGNWIEVP GKY K  R  SYCQLE DCLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

Q9LVN7 DNA polymerase delta catalytic subunit4.1e-5876.12Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDIS FH++LE RM+E N+N+K P FV+RIE+VQ+RSIMYYQQQ SQ+FLKI VALPTMV SCRGILDRG+QI+G GMKSF TYESN+LF LRFM+D
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        C++VGGNWIEVP GKYKK  R+ SYCQLEF CLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

Arabidopsis top hitse value%identityAlignment
AT5G63960.1 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases2.9e-5976.12Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDIS FH++LE RM+E N+N+K P FV+RIE+VQ+RSIMYYQQQ SQ+FLKI VALPTMV SCRGILDRG+QI+G GMKSF TYESN+LF LRFM+D
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        C++VGGNWIEVP GKYKK  R+ SYCQLEF CLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY

AT5G63960.2 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases2.9e-5976.12Show/hide
Query:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID
        MGPDDIS FH++LE RM+E N+N+K P FV+RIE+VQ+RSIMYYQQQ SQ+FLKI VALPTMV SCRGILDRG+QI+G GMKSF TYESN+LF LRFM+D
Subjt:  MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMID

Query:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY
        C++VGGNWIEVP GKYKK  R+ SYCQLEF CLY
Subjt:  CNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTCGAGGCTAGAATGAAGGAGGTAAATAGAAACAGTAAAGCACCTAGCTTCGTGCGTCGCATTGAGTTGGTCCA
AAGGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAATCGTTTCTTAAAATTGTAGTTGCACTCCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCA
TACAAATTGAGGGCTTTGGTATGAAAAGCTTCATGACGTATGAAAGCAACGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAG
GTTCCTGTTGGAAAGTACAAGAAAACTGTTAGAAGTTCATCATATTGCCAATTGGAGTTTGATTGCTTGTATCCTCTTGTTCCAGAGGTCTTCGTCTCTGTATCTGTTGC
TTTAACTTTTCTAATTGAAATTCCACTTTTAGATAGGCCTTATAATCTTAACAATTATCCCTTAACACACATCATAGATATTCAGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTCGAGGCTAGAATGAAGGAGGTAAATAGAAACAGTAAAGCACCTAGCTTCGTGCGTCGCATTGAGTTGGTCCA
AAGGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAATCGTTTCTTAAAATTGTAGTTGCACTCCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCA
TACAAATTGAGGGCTTTGGTATGAAAAGCTTCATGACGTATGAAAGCAACGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAG
GTTCCTGTTGGAAAGTACAAGAAAACTGTTAGAAGTTCATCATATTGCCAATTGGAGTTTGATTGCTTGTATCCTCTTGTTCCAGAGGTCTTCGTCTCTGTATCTGTTGC
TTTAACTTTTCTAATTGAAATTCCACTTTTAGATAGGCCTTATAATCTTAACAATTATCCCTTAACACACATCATAGATATTCAGACTTGA
Protein sequenceShow/hide protein sequence
MGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIE
VPVGKYKKTVRSSSYCQLEFDCLYPLVPEVFVSVSVALTFLIEIPLLDRPYNLNNYPLTHIIDIQT