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IVF0001247 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001247
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:18171327..18171781
RNA-Seq ExpressionIVF0001247
SyntenyIVF0001247
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]1.90e-5168.25Show/hide
Query:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN
        MPPP APPM INHND Q EGD   GLDD+QVTLL E RR GH  VR++GRGRAYQN              N+ AIKFKI KFF KTDPE+YIQWEKEVEN
Subjt:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN

Query:  VFTCHNFSDNQNVRFCVSKFKDYAQT
        VF CHNF++ Q VRFCV KFKDYAQT
Subjt:  VFTCHNFSDNQNVRFCVSKFKDYAQT

KAA0040916.1 uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]1.07e-5172.81Show/hide
Query:  LRRVGHGTVRKRGRGRAYQNH-------------NMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRR
        L   G+G VR+RGR RAYQN              NMGAIKFKIPKFF KTDPE+YIQWEKEVENVF CHNF D Q VRFCVSKFKDYA TWWDKLMSRRR
Subjt:  LRRVGHGTVRKRGRGRAYQNH-------------NMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRR

Query:  RNLEVPVDSWYEFK
        RNLE P+DS YEFK
Subjt:  RNLEVPVDSWYEFK

KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]2.34e-7574.67Show/hide
Query:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQNH-------------NMGAIKFKIPKFFEKTDPEKYIQWEKEVEN
        MPPPLAPPM INHND Q EGD    LDD+QVTLLGE RRVGHG VR+RGRGRAYQN              NM AIKFKIPKFF KTDP++YI+WEKEVEN
Subjt:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQNH-------------NMGAIKFKIPKFFEKTDPEKYIQWEKEVEN

Query:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK
        VF CHNF+D Q VRF VSK KDYAQTWWDKLMSRRRRNLE P+DSWYEFK
Subjt:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]1.06e-6971.03Show/hide
Query:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN
        MPPPLAP M INHN+ QYEGD    LDD+QVTLL E RRVGHG VR+RG G+AYQN              NM AIKFKIPKFF KTDPE+YIQWEKEVEN
Subjt:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN

Query:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDS
        VF CHNFS+ Q VRFCV+KFKDY QTWW KLMSRR+RNLE P+DS
Subjt:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDS

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]1.22e-7574.67Show/hide
Query:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQNH-------------NMGAIKFKIPKFFEKTDPEKYIQWEKEVEN
        MPPPLAPPM INHND Q EGD    LDD+QVTLLGE RRVGHG VR+RGRGRAYQN              NM AIKFKIPKFF KTDP++YI+WEKEVEN
Subjt:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQNH-------------NMGAIKFKIPKFFEKTDPEKYIQWEKEVEN

Query:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK
        VF CHNF+D Q VRF VSK KDYAQTWWDKLMSRRRRNLE P+DSWYEFK
Subjt:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein1.2e-3968.25Show/hide
Query:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN
        MPPP APPM INHND Q EGD   GLDD+QVTLL E RR GH  VR++GRGRAYQN              N+ AIKFKI KFF KTDPE+YIQWEKEVEN
Subjt:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN

Query:  VFTCHNFSDNQNVRFCVSKFKDYAQT
        VF CHNF++ Q VRFCV KFKDYAQT
Subjt:  VFTCHNFSDNQNVRFCVSKFKDYAQT

A0A5A7TK52 Retrotrans_gag domain-containing protein1.6e-5774.67Show/hide
Query:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN
        MPPPLAPPM INHND Q EGD    LDD+QVTLLGE RRVGHG VR+RGRGRAYQN              NM AIKFKIPKFF KTDP++YI+WEKEVEN
Subjt:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN

Query:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK
        VF CHNF+D Q VRF VSK KDYAQTWWDKLMSRRRRNLE P+DSWYEFK
Subjt:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK

A0A5A7TYI0 Uncharacterized protein2.1e-5271.03Show/hide
Query:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN
        MPPPLAP M INHN+ QYEGD    LDD+QVTLL E RRVGHG VR+RG G+AYQN              NM AIKFKIPKFF KTDPE+YIQWEKEVEN
Subjt:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN

Query:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDS
        VF CHNFS+ Q VRFCV+KFKDY QTWW KLMSRR+RNLE P+DS
Subjt:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDS

A0A5D3CFQ1 CCHC-type domain-containing protein2.0e-3972.81Show/hide
Query:  LRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRR
        L   G+G VR+RGR RAYQN              NMGAIKFKIPKFF KTDPE+YIQWEKEVENVF CHNF D Q VRFCVSKFKDYA TWWDKLMSRRR
Subjt:  LRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRR

Query:  RNLEVPVDSWYEFK
        RNLE P+DS YEFK
Subjt:  RNLEVPVDSWYEFK

A0A5D3CHG3 Retrotrans_gag domain-containing protein1.6e-5774.67Show/hide
Query:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN
        MPPPLAPPM INHND Q EGD    LDD+QVTLLGE RRVGHG VR+RGRGRAYQN              NM AIKFKIPKFF KTDP++YI+WEKEVEN
Subjt:  MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQN-------------HNMGAIKFKIPKFFEKTDPEKYIQWEKEVEN

Query:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK
        VF CHNF+D Q VRF VSK KDYAQTWWDKLMSRRRRNLE P+DSWYEFK
Subjt:  VFTCHNFSDNQNVRFCVSKFKDYAQTWWDKLMSRRRRNLEVPVDSWYEFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCTCCTCTAGCACCACCTATGACAATTAACCATAATGATAAGCAATATGAGGGTGATGATTTTCATGGCTTAGACGATAACCAAGTTACATTACTGGGGGAGTT
GAGACGTGTGGGACATGGAACAGTTAGAAAAAGAGGTCGTGGGAGAGCTTATCAAAATCATAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCGAGAAAACTG
ATCCAGAGAAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTACTTGCCATAATTTTAGCGACAACCAAAATGTTAGGTTTTGTGTTTCCAAATTTAAGGATTAT
GCTCAAACTTGGTGGGACAAATTAATGTCCAGAAGGAGAAGAAATCTTGAAGTACCAGTTGATTCATGGTATGAATTCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCTCCTCTAGCACCACCTATGACAATTAACCATAATGATAAGCAATATGAGGGTGATGATTTTCATGGCTTAGACGATAACCAAGTTACATTACTGGGGGAGTT
GAGACGTGTGGGACATGGAACAGTTAGAAAAAGAGGTCGTGGGAGAGCTTATCAAAATCATAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCGAGAAAACTG
ATCCAGAGAAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTACTTGCCATAATTTTAGCGACAACCAAAATGTTAGGTTTTGTGTTTCCAAATTTAAGGATTAT
GCTCAAACTTGGTGGGACAAATTAATGTCCAGAAGGAGAAGAAATCTTGAAGTACCAGTTGATTCATGGTATGAATTCAAATAA
Protein sequenceShow/hide protein sequence
MPPPLAPPMTINHNDKQYEGDDFHGLDDNQVTLLGELRRVGHGTVRKRGRGRAYQNHNMGAIKFKIPKFFEKTDPEKYIQWEKEVENVFTCHNFSDNQNVRFCVSKFKDY
AQTWWDKLMSRRRRNLEVPVDSWYEFK