CuGenDBv2

Gene ID	IVF0001293
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr06:6348555..6348983
RNA-Seq Expression	IVF0001293
Synteny	IVF0001293
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

4.01e-76

88.03

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS IRSW ARVLSF G LQLVRSVL SLQVYWAS+FVLPAYVHNEVDKILRSYLWRGKEEGRGG K
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL
        VAWV+VCLPFEEG   I+DGPSWNIASTLKILWL+LT+S SL
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL

KAA0060725.1 uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa]

5.49e-83

100

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIA
        VAWVEVCLPFEEGELAIQDGPSWNIA
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIA

KAA0065355.1 F17F8.5 [Cucumis melo var. makuwa]

2.18e-78

89.44

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGF  GNLPVRYLGLPLL GRLRSNDCAPLIQR+TS IRSWTA+VLSF G LQLVRSVL SLQVYW S+FVLPAYVHNEVDKILRSYLWRGKEEGRGG K
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL
        VAWVEVCLPFEEG LAI+DGPSWNIASTLKILWLLLTSS SL
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

4.01e-76

88.03

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS IRSW ARVLSF G LQLVRSVL SLQVYWAS+FVLPAYVHNEVDKILRSYLWRGKEEGRGG K
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL
        VAWV+VCLPFEEG   I+DGPSWNIASTLKILWL+LT+S SL
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]

3.28e-83

100

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIA
        VAWVEVCLPFEEGELAIQDGPSWNIA
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIA

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E258 uncharacterized protein LOC103496880

4.7e-68

100

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIA
        VAWVEVCLPFEEGELAIQDGPSWNIA
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIA

A0A5A7SPE5 Reverse transcriptase domain-containing protein

3.8e-65

88.03

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS IRSW ARVLSF G LQLVRSVL SLQVYWAS+FVLPAYVHNEVDKILRSYLWRGKEEGRGG K
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL
        VAWV+VCLPFEEG   I+DGPSWNIASTLKILWL+LT+S SL
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL

A0A5A7V4C1 Reverse transcriptase domain-containing protein

4.7e-68

100

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIA
        VAWVEVCLPFEEGELAIQDGPSWNIA
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIA

A0A5A7VHU9 F17F8.5

2.2e-65

89.44

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGF  GNLPVRYLGLPLL GRLRSNDCAPLIQR+TS IRSWTA+VLSF G LQLVRSVL SLQVYW S+FVLPAYVHNEVDKILRSYLWRGKEEGRGG K
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL
        VAWVEVCLPFEEG LAI+DGPSWNIASTLKILWLLLTSS SL
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL

A0A5D3DXE4 Reverse transcriptase domain-containing protein

3.8e-65

88.03

Show/hide

Query:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK
        MGF  GNLPVRYLGLPLLTGRLRSNDCAPLIQRITS IRSW ARVLSF G LQLVRSVL SLQVYWAS+FVLPAYVHNEVDKILRSYLWRGKEEGRGG K
Subjt:  MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK

Query:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL
        VAWV+VCLPFEEG   I+DGPSWNIASTLKILWL+LT+S SL
Subjt:  VAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.5e-15

32.81

Show/hide

Query:  LPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFKVAWVEVCLPFEEGE
        +P+L  R+  +    +++R++S +  W  + LSF G L L ++VL S+ V+  S  +LP  + N +D++ R++LW    E +    V W +VC P +EG 
Subjt:  LPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFKVAWVEVCLPFEEGE

Query:  LAIQDGPSWNIASTLKILWLLLTSSSSL
        L ++   S N A   K+ W LL   +SL
Subjt:  LAIQDGPSWNIASTLKILWLLLTSSSSL

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

8.1e-28

47.69

Show/hide

Query:  FGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFKVA
        F  G LPVRYLGLPLLT ++ ++D  PL+++I   I  WTAR LSF G LQL+ SV+HSL  +W S F LP+    E+D I  S+LW G E      KVA
Subjt:  FGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFKVA

Query:  WVEVCLPFEEGELAIQD------GPSWNIA
        W +VC P +EG L I+       G  W+I+
Subjt:  WVEVCLPFEEGELAIQD------GPSWNIA

AT4G29090.1 Ribonuclease H-like superfamily protein

1.1e-05

29.27

Show/hide

Query:  SLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFKVAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL
        +L  Y  + F+LP  V  ++  +L  + WR K+E +G    AW  +     EG +  +D  ++N+A   K +W +L+   SL
Subjt:  SLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFKVAWVEVCLPFEEGELAIQDGPSWNIASTLKILWLLLTSSSSL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTTTTGGCCTTGGAAATCTCCCTGTTCGCTATCTTGGGCTTCCTTTACTTACTGGTAGGTTACGTTCTAATGATTGTGCTCCTCTTATTCAGCGTATCACTAGTTG
GATTCGTTCTTGGACTGCTCGAGTTCTATCTTTTTTTGGTACATTGCAGCTTGTTCGTTCTGTGCTCCACAGCCTTCAAGTTTACTGGGCTAGTATGTTTGTTCTTCCTG
CGTATGTGCATAATGAGGTGGATAAGATACTGAGGTCTTATCTTTGGAGGGGTAAGGAGGAAGGTAGAGGGGGTTTTAAGGTGGCATGGGTGGAAGTGTGTCTCCCCTTT
GAGGAGGGTGAACTTGCAATTCAAGATGGGCCTTCTTGGAATATTGCGAGTACTTTGAAGATTCTGTGGTTGCTGTTGACGAGTTCGAGTTCTCTTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFKVAWVEVCLPF
EEGELAIQDGPSWNIASTLKILWLLLTSSSSL

IVF0001293 (gene) of Melon (IVF77) v1 genome