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IVF0001432 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001432
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr08:28290319..28292087
RNA-Seq ExpressionIVF0001432
SyntenyIVF0001432
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.42e-2558.33Show/hide
Query:  NEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKIDPSTISLFCIGHKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSKVVGGKTK
        NEGN LSS  S V PKK++TRMP T+F +L  KS           PST+ LF IGHK FEL DSY E+FNLHSWH+PSHI+ KYRSGS++ G K +
Subjt:  NEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKIDPSTISLFCIGHKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSKVVGGKTK

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]7.05e-1538.69Show/hide
Query:  VNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKI-------------------------DPSTISLF----CIGHKY------------
        V+EGN LS R S V  +K+RTRM  TQF    VKSDP+ VSL  +                          P + S+      +G K             
Subjt:  VNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKI-------------------------DPSTISLF----CIGHKY------------

Query:  ------FELRDSYCEDFNLHSWHYPSHIFPKYRSGSKVVGGKTKVQYVMIEKMANALPTSSERSSGVR
              FEL+DS  +DF+LHS H PS +F KYRSG ++V  +TKVQ+  IEKMANAL  S   S G R
Subjt:  ------FELRDSYCEDFNLHSWHYPSHIFPKYRSGSKVVGGKTKVQYVMIEKMANALPTSSERSSGVR

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]3.45e-2132.46Show/hide
Query:  VNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVS----LVKIDPST-----------------------------------------------
        +++GN LSSR S V P+K+RTRMP TQFF+L VK+ P+MVS    ++ I  S+                                               
Subjt:  VNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVS----LVKIDPST-----------------------------------------------

Query:  -----------------------------------------------------------ISLFCIGHKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSK
                                                                   + L C+GHK+FEL+DSY EDF+LHSW  PS +F KYR+GSK
Subjt:  -----------------------------------------------------------ISLFCIGHKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSK

Query:  VVGGKTKVQYVMIEKMANALPTSSERSS
        +V G+TKVQ V IEKMAN LPTS +R S
Subjt:  VVGGKTKVQYVMIEKMANALPTSSERSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.11e-1168.63Show/hide
Query:  EDFNLHSWHYPSHIFPKYRSGSKVVGGKTKVQYVMIEKMANALPTSSERSS
        +DF+LH WH+ S IFP+YRSGS++VG +TKVQ   IEK+ANALPTS ERSS
Subjt:  EDFNLHSWHYPSHIFPKYRSGSKVVGGKTKVQYVMIEKMANALPTSSERSS

TYK23423.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa]3.10e-1045Show/hide
Query:  LPMSSERSSNVKNH--KTCIPVNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKIDPSTISLFCIGHKYFELRDSYCED------FNLH
        LP S ER S V+NH   TC   +EGN L+SR S VR KK R RMPQT       KS P MVS +      ISL   G +    R+S          F  H
Subjt:  LPMSSERSSNVKNH--KTCIPVNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKIDPSTISLFCIGHKYFELRDSYCED------FNLH

Query:  SWHYPSHIFPKYRSGSKVVG
        SWH P H+F +Y+SGS++VG
Subjt:  SWHYPSHIFPKYRSGSKVVG

TrEMBL top hitse value%identityAlignment
A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed1.2e-1832.46Show/hide
Query:  VNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVS----LVKIDPST-----------------------------------------------
        +++GN LSSR S V P+K+RTRMP TQFF+L VK+ P+MVS    ++ I  S+                                               
Subjt:  VNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVS----LVKIDPST-----------------------------------------------

Query:  -----------------------------------------------------------ISLFCIGHKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSK
                                                                   + L C+GHK+FEL+DSY EDF+LHSW  PS +F KYR+GSK
Subjt:  -----------------------------------------------------------ISLFCIGHKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSK

Query:  VVGGKTKVQYVMIEKMANALPTSSERSS
        +V G+TKVQ V IEKMAN LPTS +R S
Subjt:  VVGGKTKVQYVMIEKMANALPTSSERSS

A0A5A7VGQ5 Uncharacterized protein3.4e-1338.1Show/hide
Query:  VNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKI--------------------------------------------DPSTISLFCIG
        V+EGN LS R S V  +K+RTRM  TQF    VKSDP+ VSL  +                                            D + +S    G
Subjt:  VNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKI--------------------------------------------DPSTISLFCIG

Query:  ---HKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSKVVGGKTKVQYVMIEKMANALPTSSERSSGVR
              FEL+DS  +DF+LHS H PS +F KYRSG ++V  +TKVQ+  IEKMANAL  S   S G R
Subjt:  ---HKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSKVVGGKTKVQYVMIEKMANALPTSSERSSGVR

A0A5D3BG85 Uncharacterized protein3.5e-1068.63Show/hide
Query:  EDFNLHSWHYPSHIFPKYRSGSKVVGGKTKVQYVMIEKMANALPTSSERSS
        +DF+LH WH+ S IFP+YRSGS++VG +TKVQ   IEK+ANALPTS ERSS
Subjt:  EDFNLHSWHYPSHIFPKYRSGSKVVGGKTKVQYVMIEKMANALPTSSERSS

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein4.9e-2058.33Show/hide
Query:  NEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKIDPSTISLFCIGHKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSKVVGGKTK
        NEGN LSS  S V PKK++TRMP T+F +L  KS           PST+ LF IGHK FEL DSY E+FNLHSWH+PSHI+ KYRSGS++ G K +
Subjt:  NEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKIDPSTISLFCIGHKYFELRDSYCEDFNLHSWHYPSHIFPKYRSGSKVVGGKTK

A0A5D3DIK9 DUF4283 domain-containing protein5.1e-0944.44Show/hide
Query:  LPMSSERSSNVKNH--KTCIPVNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMV-SLVKIDPSTISLFCIGHKYFELRDS--YCEDFNLHSWH
        LP S ER S V+NH   TC   +EGN L+SR S VR KK R RMPQT       KS P MV SL  +   ++S+F           S      F  HSWH
Subjt:  LPMSSERSSNVKNH--KTCIPVNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMV-SLVKIDPSTISLFCIGHKYFELRDS--YCEDFNLHSWH

Query:  YPSHIFPKYRSGSKVVG
         P H+F +Y+SGS++VG
Subjt:  YPSHIFPKYRSGSKVVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACGCTCTTCCAATGAGTAGCGAACGCTCGTCCAATGTCAAAAACCATAAAACATGCATTCCAGTGAACGAAGGAAACAGACTAAGCTCAAGAATTTCTGGTGT
TCGTCCCAAGAAAATGAGAACGAGAATGCCCCAGACTCAGTTTTTCTTTCTCCGGGTAAAAAGTGATCCTTCAATGGTTTCTTTGGTAAAAATCGATCCTTCAACGATTT
CTTTGTTTTGTATTGGTCATAAGTATTTCGAGCTTCGGGACTCATACTGCGAGGACTTCAATCTACATTCCTGGCATTATCCTTCACACATTTTTCCAAAGTATAGGTCA
GGAAGCAAGGTCGTTGGAGGAAAAACTAAGGTGCAATATGTGATGATCGAAAAGATGGCCAATGCTCTTCCAACGAGTAGCGAACGCTCATCGGGTGTCAGAAAGCATTG
A
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACGCTCTTCCAATGAGTAGCGAACGCTCGTCCAATGTCAAAAACCATAAAACATGCATTCCAGTGAACGAAGGAAACAGACTAAGCTCAAGAATTTCTGGTGT
TCGTCCCAAGAAAATGAGAACGAGAATGCCCCAGACTCAGTTTTTCTTTCTCCGGGTAAAAAGTGATCCTTCAATGGTTTCTTTGGTAAAAATCGATCCTTCAACGATTT
CTTTGTTTTGTATTGGTCATAAGTATTTCGAGCTTCGGGACTCATACTGCGAGGACTTCAATCTACATTCCTGGCATTATCCTTCACACATTTTTCCAAAGTATAGGTCA
GGAAGCAAGGTCGTTGGAGGAAAAACTAAGGTGCAATATGTGATGATCGAAAAGATGGCCAATGCTCTTCCAACGAGTAGCGAACGCTCATCGGGTGTCAGAAAGCATTG
A
Protein sequenceShow/hide protein sequence
MANALPMSSERSSNVKNHKTCIPVNEGNRLSSRISGVRPKKMRTRMPQTQFFFLRVKSDPSMVSLVKIDPSTISLFCIGHKYFELRDSYCEDFNLHSWHYPSHIFPKYRS
GSKVVGGKTKVQYVMIEKMANALPTSSERSSGVRKH