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IVF0001453 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001453
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein RADIALIS-like 4
Genome locationchr03:25622548..25623836
RNA-Seq ExpressionIVF0001453
SyntenyIVF0001453
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444713.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]8.02e-62100Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ
        MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ

XP_022997502.1 protein RADIALIS-like 4 [Cucurbita maxima]3.67e-4985.86Show/hide
Query:  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSK---HYSYNNFLDEEQRLKGLKLQ
        T+SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYSK   H S N FLDEEQRLKGLKL+
Subjt:  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSK---HYSYNNFLDEEQRLKGLKLQ

XP_023547022.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]1.28e-4985.86Show/hide
Query:  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSK---HYSYNNFLDEEQRLKGLKLQ
        T+SSSSSSSSSWSSKQNK+FENALTVYDKDSPDRWQ LA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYSK   HYS N FLDEEQ LKGLKL+
Subjt:  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSK---HYSYNNFLDEEQRLKGLKLQ

XP_031737271.1 protein RADIALIS-like 4 [Cucumis sativus]1.61e-5998.02Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN-FLDEEQRLKGLKL
        MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN F+DEEQRLKGLKL
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN-FLDEEQRLKGLKL

Query:  Q
        Q
Subjt:  Q

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]1.99e-5591.75Show/hide
Query:  STTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ
        S+ SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLA A+GGKTA+EVK HY+MLVEDVHNIETG+VPLPNYSKHYSYNNFLDEEQRLKGLKLQ
Subjt:  STTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein1.3e-4097.87Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFLDEEQR
        MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+DEEQR
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY-NNFLDEEQR

A0A1S3BBR2 protein RADIALIS-like 43.6e-46100Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ
        MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ

A0A5A7VFX7 Protein RADIALIS-like 41.6e-33100Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQR
        MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQR
Subjt:  MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQR

A0A6J1K580 protein RADIALIS-like 41.5e-3685.86Show/hide
Query:  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKLQ
        T+SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNY   SKH S N FLDEEQRLKGLKL+
Subjt:  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKLQ

A0A6J1KQS6 protein RADIALIS-like 41.4e-3483.84Show/hide
Query:  STTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKL
        S++SSSSSSS+ WSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTA+EVKRHYEMLVEDVHNIE G++PLPNY   SK Y Y+NFLDEEQRLKGLKL
Subjt:  STTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY---SKHYSYNNFLDEEQRLKGLKL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.5e-2254.9Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN--FLDEEQRLKGLK
        MASS  S SS SS SW++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT +EVKRHYE+LV+D+++IE G VP PNY       N     EE+R++ ++
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN--FLDEEQRLKGLK

Query:  LQ
        LQ
Subjt:  LQ

Q1A173 Protein RADIALIS-like 63.1e-2359.79Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY----SKHYSYNNFLDEEQRLKGLKL
        S+S SS S W+  QNKMFE AL VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S   S N+F  + +++K LK+
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY----SKHYSYNNFLDEEQRLKGLKL

Q58FS3 Transcription factor RADIALIS2.5e-2053.19Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ
        +S+  S   WS+K+NK FE AL VYDKD+PDRW  +ARAV G+T +EVK+HYE+LVED+  IE+GKVP PNY    +  N   +E+R + LK++
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ

Q8GW75 Protein RADIALIS-like 52.7e-2273.61Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY
        SSS SSSSSW+SKQNKMFE AL VYDKD+PDRWQ +A+AVG K+A+EVKRHY++LVED+ NIE   VPLP Y
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY

Q9SIJ5 Protein RADIALIS-like 28.6e-2153.61Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN---FLDEEQRLKGLKLQ
        S SS  S SW+ KQNK FE AL VYD+D+PDRW  +ARAVGGKT +E KR Y++LV D+ +IE G VP P+Y      +N     DEE+R++ +KLQ
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN---FLDEEQRLKGLKLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.9e-2373.61Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY
        SSS SSSSSW+SKQNKMFE AL VYDKD+PDRWQ +A+AVG K+A+EVKRHY++LVED+ NIE   VPLP Y
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY

AT1G75250.1 RAD-like 62.5e-2361.9Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDE
        S+S SS S W+  QNKMFE AL VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S +  +++
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDE

AT1G75250.2 RAD-like 62.2e-2459.79Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY----SKHYSYNNFLDEEQRLKGLKL
        S+S SS S W+  QNKMFE AL VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S   S N+F  + +++K LK+
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY----SKHYSYNNFLDEEQRLKGLKL

AT2G21650.1 Homeodomain-like superfamily protein6.1e-2253.61Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN---FLDEEQRLKGLKLQ
        S SS  S SW+ KQNK FE AL VYD+D+PDRW  +ARAVGGKT +E KR Y++LV D+ +IE G VP P+Y      +N     DEE+R++ +KLQ
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN---FLDEEQRLKGLKLQ

AT4G39250.1 RAD-like 13.2e-2354.9Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN--FLDEEQRLKGLK
        MASS  S SS SS SW++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT +EVKRHYE+LV+D+++IE G VP PNY       N     EE+R++ ++
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNN--FLDEEQRLKGLK

Query:  LQ
        LQ
Subjt:  LQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCATCTACTACTTCCTCTTCATCATCTTCATCTTCAAGCTGGAGTTCAAAGCAAAACAAAATGTTCGAAAATGCCCTTACAGTGTACGACAAGGACTCGCCCGA
CCGGTGGCAGAAGCTGGCAAGAGCAGTCGGCGGGAAGACGGCGGACGAGGTGAAGAGACACTATGAGATGCTGGTTGAGGACGTCCATAATATTGAGACTGGCAAAGTTC
CTTTGCCTAATTACTCTAAACATTATTCTTACAACAACTTTCTTGACGAAGAACAAAGATTGAAGGGTCTAAAGTTACAATGA
mRNA sequenceShow/hide mRNA sequence
CAAAAATTATAAAAATGGCATCATCTACTACTTCCTCTTCATCATCTTCATCTTCAAGCTGGAGTTCAAAGCAAAACAAAATGTTCGAAAATGCCCTTACAGTGTACGAC
AAGGACTCGCCCGACCGGTGGCAGAAGCTGGCAAGAGCAGTCGGCGGGAAGACGGCGGACGAGGTGAAGAGACACTATGAGATGCTGGTTGAGGACGTCCATAATATTGA
GACTGGCAAAGTTCCTTTGCCTAATTACTCTAAACATTATTCTTACAACAACTTTCTTGACGAAGAACAAAGATTGAAGGGTCTAAAGTTACAATGATTTGCAATCACGT
CAAGATTGAAGTGAAGAATAAAAGATAATACAATTATATTATTCAACCAAAGCTCCAAAACTGAAATATATTGTCCTTGTAGATATATATAATAAGAAAATTATTCTACA
AAGTTTTTTCCACTGTACTATATATACATATATAATATATGAAGTATTTTGATTAATTTACTATGC
Protein sequenceShow/hide protein sequence
MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ