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IVF0001476 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001476
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr05:20701751..20701930
RNA-Seq ExpressionIVF0001476
SyntenyIVF0001476
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036810.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]1.10e-1764.41Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL
        MSP++I GT+PG SS+G+ SS G KRKRGG   E  EIIR   EYANDQLK I EWPN+
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL

KAA0055448.1 uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa]5.42e-1666.1Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL
        MS ++I GT+P  SSKG+ +S  SKRKRGGHT ETV IIR  ME+ANDQLK I EWPN+
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL

KAA0055556.1 retrotransposon protein [Cucumis melo var. makuwa]2.80e-2598.04Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
        MSPDDITGTRPGHSSKGRLSSRGSKRKR GHTTETVEIIRTTMEYANDQLK
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK

KAA0060365.1 retrotransposon protein [Cucumis melo var. makuwa]5.43e-1662.71Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL
        M PDDI GTRP  SS+ R  S GSKRK+GG   E+VEIIR+ MEY N QLK I EW N+
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL

TYK01364.1 retrotransposon protein [Cucumis melo var. makuwa]8.91e-26100Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
        MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK

TrEMBL top hitse value%identityAlignment
A0A5A7T0C2 RING-H2 finger protein ATL667.6e-1264.41Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL
        MSP++I GT+PG SS+G+ SS G KRKRGG   E  EIIR   EYANDQLK I EWPN+
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL

A0A5A7UK94 Uncharacterized protein3.4e-1266.1Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL
        MS ++I GT+P  SSKG+ +S  SKRKRGGHT ETV IIR  ME+ANDQLK I EWPN+
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL

A0A5A7UMR6 Retrotransposon protein2.4e-1898.04Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
        MSPDDITGTRPGHSSKGRLSSRGSKRKR GHTTETVEIIRTTMEYANDQLK
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK

A0A5A7V3C0 Retrotransposon protein4.9e-1162.71Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL
        M PDDI GTRP  SS+ R  S GSKRK+GG   E+VEIIR+ MEY N QLK I EW N+
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL

A0A5D3BQB5 Retrotransposon protein2.9e-19100Show/hide
Query:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
        MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK
Subjt:  MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGA
AATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCTGACGACATCACTGGCACACGACCTGGTCATTCAAGTAAGGGCAGACTTAGTTCACGCGGCTCCAAAAGGAAGCGGGGAGGCCATACGACTGAGACTGTGGA
AATCATTCGCACTACAATGGAATATGCAAATGACCAGTTAAAGGTCATTGGAGAATGGCCAAATTTATAA
Protein sequenceShow/hide protein sequence
MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLKVIGEWPNL