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IVF0001480 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001480
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description40S ribosomal protein S13-like
Genome locationchr05:10531703..10531858
RNA-Seq ExpressionIVF0001480
SyntenyIVF0001480
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043612.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]1.21e-1881.13Show/hide
Query:  MCVFLLL--SKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +C+ ++L  S GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Subjt:  MCVFLLL--SKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

KAA0046917.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]1.55e-1887.23Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L + GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

KAA0049888.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]1.55e-1887.23Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L + GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

KAA0056184.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]1.11e-1891.49Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L + GLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

TYK07625.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]1.55e-1887.23Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L + GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

TrEMBL top hitse value%identityAlignment
A0A0L8G2L9 40S ribosomal protein S132.0e-1382.98Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L +KGLAPKIPEDLYHLIKKAVS+RKH+ER+RKDKDSKFRLIL++S
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

A0A5A7TK12 40S ribosomal protein S132.0e-1381.13Show/hide
Query:  MCVFLLL--SKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +C+ ++L  S GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILVDS
Subjt:  MCVFLLL--SKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

A0A5A7ULW0 40S ribosomal protein S13-like1.8e-1491.49Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L + GLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

A0A6P7TQ93 40S ribosomal protein S132.0e-1382.98Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L +KGLAPKIPEDLYHLIKKAVS+RKH+ER+RKDKDSKFRLIL++S
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

A8UAD8 40S ribosomal protein S132.0e-1387.23Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L +KGLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILV+S
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S134.7e-1585.11Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L + GLAP+IPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILV+S
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

P47772 40S ribosomal protein S134.7e-1580.85Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L SKGLAP +PEDLYHLIKKAV++RKHLER+RKDKD+KFRLILV+S
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

P62299 40S ribosomal protein S134.7e-1579.59Show/hide
Query:  VFLLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        V +L +KG+AP+IPEDLYHLIKKAV+IRKHLER+RKDKDSK+RLILV+S
Subjt:  VFLLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

P62300 40S ribosomal protein S134.7e-1579.59Show/hide
Query:  VFLLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        V +L +KG+AP+IPEDLYHLIKKAV+IRKHLER+RKDKDSK+RLILV+S
Subjt:  VFLLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

P62302 40S ribosomal protein S132.7e-1585.11Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L + GLAP+IPEDLYHLIKKAVSIRKHLER+RKDKDSKFRLILV+S
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S154.3e-1682.98Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L + GLAP+IPEDLYHLIKKAV+IRKHLER+RKDKDSKFRLILV+S
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS

AT4G00100.1 ribosomal protein S13A4.3e-1682.98Show/hide
Query:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS
        +L + GLAP+IPEDLYHLIKKAV+IRKHLER+RKDKDSKFRLILV+S
Subjt:  LLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCAAAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGCATAG
GAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCAAAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGCATAG
GAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTTGATTCTTGA
Protein sequenceShow/hide protein sequence
MCVFLLLSKGLAPKIPEDLYHLIKKAVSIRKHLERHRKDKDSKFRLILVDS