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IVF0001525 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001525
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPre-mRNA-splicing factor SPF27-like protein
Genome locationchr01:16332760..16333019
RNA-Seq ExpressionIVF0001525
SyntenyIVF0001525
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039050.1 hypothetical protein E6C27_scaffold84G001440 [Cucumis melo var. makuwa]6.84e-1967.61Show/hide
Query:  MQKIAQEQNEKIEKVNRERKFHQVNSILHFVFNLVLQVEAEHKEEEESE----QESGDEFDYQGDKPKICI
        MQK+AQEQNEKIEKVNRERKFHQV              EAEHKEEEESE    QESGDE+D QGDKP++CI
Subjt:  MQKIAQEQNEKIEKVNRERKFHQVNSILHFVFNLVLQVEAEHKEEEESE----QESGDEFDYQGDKPKICI
KAG7012138.1 Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.09e-0570.97Show/hide
Query:  LIVIRMQKIAQEQNEKIEKVNRERKFHQVNS
        L+ +R+Q++AQEQNEK+EKVNRERKFHQ N+
Subjt:  LIVIRMQKIAQEQNEKIEKVNRERKFHQVNS
TYJ99022.1 pre-mRNA-splicing factor SPF27-like protein [Cucumis melo var. makuwa]3.86e-0683.87Show/hide
Query:  IVIRMQKIAQEQNEKIEKVNRERKFHQVNSI
        ++ RMQK+AQEQNEKIEKVNRERKFHQV+SI
Subjt:  IVIRMQKIAQEQNEKIEKVNRERKFHQVNSI
TYJ99755.1 hypothetical protein E5676_scaffold252G00330 [Cucumis melo var. makuwa]6.07e-2065.33Show/hide
Query:  IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILHFVFNLVLQVEAEHKEEEESE----QESGDEFDYQGDKPKICI
        ++ RMQK+AQEQNEKIEKVNRERKFHQV              EAEHKEEEESE    QESGDE+D QGDKP++CI
Subjt:  IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILHFVFNLVLQVEAEHKEEEESE----QESGDEFDYQGDKPKICI
XP_004512670.1 pre-mRNA-splicing factor SPF27 homolog [Cicer arietinum]5.23e-0677.42Show/hide
Query:  LIVIRMQKIAQEQNEKIEKVNRERKFHQVNS
        L + RMQK+AQEQNEKIEKVNRERK+HQ N+
Subjt:  LIVIRMQKIAQEQNEKIEKVNRERKFHQVNS
TrEMBL top hitse value%identityAlignment
A0A5A7T722 Uncharacterized protein1.1e-1267.61Show/hide
Query:  MQKIAQEQNEKIEKVNRERKFHQVNSILHFVFNLVLQVEAEHKEEEES----EQESGDEFDYQGDKPKICI
        MQK+AQEQNEKIEKVNRERKFH              QVEAEHKEEEES    EQESGDE+D QGDKP++CI
Subjt:  MQKIAQEQNEKIEKVNRERKFHQVNSILHFVFNLVLQVEAEHKEEEES----EQESGDEFDYQGDKPKICI
A0A5D3BGY3 Pre-mRNA-splicing factor SPF27-like protein7.2e-0483.87Show/hide
Query:  IVIRMQKIAQEQNEKIEKVNRERKFHQVNSI
        ++ RMQK+AQEQNEKIEKVNRERKFHQV+SI
Subjt:  IVIRMQKIAQEQNEKIEKVNRERKFHQVNSI
A0A5D3BN71 Uncharacterized protein1.7e-1365.33Show/hide
Query:  IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILHFVFNLVLQVEAEHKEEEES----EQESGDEFDYQGDKPKICI
        ++ RMQK+AQEQNEKIEKVNRERKFH              QVEAEHKEEEES    EQESGDE+D QGDKP++CI
Subjt:  IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILHFVFNLVLQVEAEHKEEEES----EQESGDEFDYQGDKPKICI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G18165.1 modifier of snc1,48.4e-0571.43Show/hide
Query:  LIVIRMQKIAQEQNEKIEKVNRERKFHQ
        + + RMQ++AQEQNE+IEKVNRERK+HQ
Subjt:  LIVIRMQKIAQEQNEKIEKVNRERKFHQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATTGTTATTAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCCATTTTGT
ATTTAATCTAGTATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAACAAGAATCTGGGGATGAATTTGATTATCAGGGAGATAAACCTAAAATTTGTATTT
AG
mRNA sequenceShow/hide mRNA sequence
ATGTTGATTGTTATTAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCCATTTTGT
ATTTAATCTAGTATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAACAAGAATCTGGGGATGAATTTGATTATCAGGGAGATAAACCTAAAATTTGTATTT
AG
Protein sequenceShow/hide protein sequence
MLIVIRMQKIAQEQNEKIEKVNRERKFHQVNSILHFVFNLVLQVEAEHKEEEESEQESGDEFDYQGDKPKICI