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IVF0001547 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001547
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:19033368..19034376
RNA-Seq ExpressionIVF0001547
SyntenyIVF0001547
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051899.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.84e-2643.38Show/hide
Query:  SRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNK-RNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTSEYNN
        SR +GR R  F P C+VC KIGHT ++CYN+F+K FV N G N  + + NN R NN K   A VT++  NPF    +N +D NWY +  A NH+T++Y N
Subjt:  SRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNK-RNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTSEYNN

Query:  LMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL
        L N VEY     GG  ++   +    ++  IGN  L
Subjt:  LMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL

KAA0053532.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.10e-119100Show/hide
Query:  MNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDN
        MNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDN
Subjt:  MNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDN

Query:  GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKLKLFLLTD
        GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKLKLFLLTD
Subjt:  GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKLKLFLLTD

TYJ99887.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.84e-2643.38Show/hide
Query:  SRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNK-RNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTSEYNN
        SR +GR R  F P C+VC KIGHT ++CYN+F+K FV N G N  + + NN R NN K   A VT++  NPF    +N +D NWY +  A NH+T++Y N
Subjt:  SRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNK-RNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTSEYNN

Query:  LMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL
        L N VEY     GG  ++   +    ++  IGN  L
Subjt:  LMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL

XP_038905161.1 uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]7.17e-2146.85Show/hide
Query:  GGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNS-GNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTS
        GGH  R +GRGR+  +P+CQVC K+GH A  C+N++ ++FV N   NK     NN   N      AL  A  +NPF++  +N  D NWY D GA+NHVTS
Subjt:  GGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNS-GNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTS

Query:  EYNNLMNLVEY
        ++NNL N +EY
Subjt:  EYNNLMNLVEY

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]5.22e-2146.85Show/hide
Query:  GGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNS-GNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTS
        GGH  R +GRGR+  +P+CQVC K+GH A  C+N++ ++FV N   NK     NN   N      AL  A  +NPF++  +N  D NWY D GA+NHVTS
Subjt:  GGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNS-GNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDGGATNHVTS

Query:  EYNNLMNLVEY
        ++NNL N +EY
Subjt:  EYNNLMNLVEY

TrEMBL top hitse value%identityAlignment
A0A5A7UCN8 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-91100Show/hide
Query:  MNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDN
        MNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDN
Subjt:  MNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDN

Query:  GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKLKLFLLTD
        GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKLKLFLLTD
Subjt:  GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKLKLFLLTD

A0A5A7UEH3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-2040.51Show/hide
Query:  NQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSN-KRNSGNNPRYNNGKAQVALVTANSNNPFISISDN
        N   QG   + +  N  + G  SR +GR R  F P C+VC KIGHT ++CYN+F+K FV N G N  + + NN R NN K   A VT++  NPF    +N
Subjt:  NQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSN-KRNSGNNPRYNNGKAQVALVTANSNNPFISISDN

Query:  GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL
         +D NWY +  A NH+T++Y NL N VEY     GG  ++   +    ++  IGN  L
Subjt:  GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL

A0A5C7HR05 Uncharacterized protein8.6e-1341.27Show/hide
Query:  NNQHGGHC---SRNQGRGRSW-----FRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNN-GKAQVALVTANSNNPFISISDNGIDPNW
        N+Q GGH    +R +GRGR        RP+CQVC KIGHT NVCY+ F +++  N        GN     +  +     V +NS N     S +  DPNW
Subjt:  NNQHGGHC---SRNQGRGRSW-----FRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNN-GKAQVALVTANSNNPFISISDNGIDPNW

Query:  YTDGGATNHVTSEYNNLMNLVEYEEL
        Y D GATNH+T ++NNL    EY  L
Subjt:  YTDGGATNHVTSEYNNLMNLVEYEEL

A0A5D3BL83 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-2040.51Show/hide
Query:  NQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSN-KRNSGNNPRYNNGKAQVALVTANSNNPFISISDN
        N   QG   + +  N  + G  SR +GR R  F P C+VC KIGHT ++CYN+F+K FV N G N  + + NN R NN K   A VT++  NPF    +N
Subjt:  NQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSN-KRNSGNNPRYNNGKAQVALVTANSNNPFISISDN

Query:  GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL
         +D NWY +  A NH+T++Y NL N VEY     GG  ++   +    ++  IGN  L
Subjt:  GIDPNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-1439.35Show/hide
Query:  NQGQGRSENLFNNQHGG-HCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGID
        +Q  G + N    Q GG +  R +G+GR   +P CQVC K GH+A VCYN+F+K F+S L  ++    +N  ++       LVT  S N F + +D  I+
Subjt:  NQGQGRSENLFNNQHGG-HCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGID

Query:  PNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL
         NWY D GATNH+T EY+NL N  EY      G  KI   +     +  IGN  L
Subjt:  PNWYTDGGATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAACCAAATCAGGGACAAGGTCGTAGTGAAAATTTATTTAACAACCAACATGGTGGTCACTGCTCAAGAAATCAAGGAAGAGGCAGAAGTTGGTTTAGGCCCAT
TTGTCAAGTTTGCACAAAAATTGGTCACACTGCAAATGTCTGCTACAATCAGTTCCATAAGAATTTTGTTTCTAACTTGGGCTCTAATAAAAGAAATAGTGGAAACAATC
CTCGCTACAACAATGGCAAAGCTCAAGTAGCCTTGGTGACAGCCAACAGTAACAATCCATTTATTTCTATTAGTGACAATGGCATTGATCCAAACTGGTATACGGACGGC
GGAGCAACCAACCATGTGACATCCGAGTACAATAATCTCATGAATCTTGTTGAATACGAAGAGCTTGTTGAAGGAGGGTTTAGCAAGATTGGAAGCAAAGATTCGACAGT
TTGGAGGTTGAAGAAGATAGGAAACCAAAAGCTCAAGTTATTTCTCTTGACAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACCAACCAAATCAGGGACAAGGTCGTAGTGAAAATTTATTTAACAACCAACATGGTGGTCACTGCTCAAGAAATCAAGGAAGAGGCAGAAGTTGGTTTAGGCCCAT
TTGTCAAGTTTGCACAAAAATTGGTCACACTGCAAATGTCTGCTACAATCAGTTCCATAAGAATTTTGTTTCTAACTTGGGCTCTAATAAAAGAAATAGTGGAAACAATC
CTCGCTACAACAATGGCAAAGCTCAAGTAGCCTTGGTGACAGCCAACAGTAACAATCCATTTATTTCTATTAGTGACAATGGCATTGATCCAAACTGGTATACGGACGGC
GGAGCAACCAACCATGTGACATCCGAGTACAATAATCTCATGAATCTTGTTGAATACGAAGAGCTTGTTGAAGGAGGGTTTAGCAAGATTGGAAGCAAAGATTCGACAGT
TTGGAGGTTGAAGAAGATAGGAAACCAAAAGCTCAAGTTATTTCTCTTGACAGATTGA
Protein sequenceShow/hide protein sequence
MNQPNQGQGRSENLFNNQHGGHCSRNQGRGRSWFRPICQVCTKIGHTANVCYNQFHKNFVSNLGSNKRNSGNNPRYNNGKAQVALVTANSNNPFISISDNGIDPNWYTDG
GATNHVTSEYNNLMNLVEYEELVEGGFSKIGSKDSTVWRLKKIGNQKLKLFLLTD