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IVF0001584 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001584
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr03:12709121..12709543
RNA-Seq ExpressionIVF0001584
SyntenyIVF0001584
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032819.1 retrotransposon protein [Cucumis melo var. makuwa]3.32e-4968.22Show/hide
Query:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS
        MR PACSGF WND+ KYII +K++ DNWVRSHP  K +LNK  PY+D+L YVFDRD+ATG F ETF +VG NEP GY  FDM DGN+EF  +YSQGID+S
Subjt:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS

Query:  QDDVRAS
        QDD+RAS
Subjt:  QDDVRAS

KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]1.05e-4874.07Show/hide
Query:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNK-EFSSLYSQGIDI
        MR PACSGF WND+ KYII EK+V DNW+RSHP AK +LNK   YYDELAYVF+ DRATG FVETF ++G NEP GYEGFDMSDGN  EF  +YSQGIDI
Subjt:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNK-EFSSLYSQGIDI

Query:  SQDDVRAS
        SQDDVR S
Subjt:  SQDDVRAS

KAA0041550.1 retrotransposon protein [Cucumis melo var. makuwa]2.69e-4971.96Show/hide
Query:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS
        MR PACSGF WN++ K II EK++ DNWVRSHP AK +LNK   YYDEL YVFD DRAT  F ETF ++G NEP+GYEGFDM+DGN+EFSS+YSQGID+S
Subjt:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS

Query:  QDDVRAS
        QDDVRAS
Subjt:  QDDVRAS

KAA0045003.1 retrotransposon protein [Cucumis melo var. makuwa]1.31e-5171.03Show/hide
Query:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS
        MR PACSGF WNDD K II EK++ DNWVRSHP AK +LNK  PYY++L+YVFD DR TGHF ETFT++ FNEP+GYE FDM +GN+EF S+YSQGID+S
Subjt:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS

Query:  QDDVRAS
        Q+DVRAS
Subjt:  QDDVRAS

KAA0063924.1 retrotransposon protein [Cucumis melo var. makuwa]7.42e-76100Show/hide
Query:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS
        MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS
Subjt:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS

Query:  QDDVRAS
        QDDVRAS
Subjt:  QDDVRAS

TrEMBL top hitse value%identityAlignment
A0A5A7TNB5 Retrotransposon protein1.0e-3871.03Show/hide
Query:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS
        MR PACSGF WNDD K II EK++ DNWVRSHP AK +LNK  PYY++L+YVFD DR TGHF ETFT++ FNEP+GYE FDM +GN+EF S+YSQGID+S
Subjt:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS

Query:  QDDVRAS
        Q+DVRAS
Subjt:  QDDVRAS

A0A5A7UWV7 Retrotransposon protein3.8e-3873.08Show/hide
Query:  PACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDD
        PACSGF WND+ K II EK++ DNWVRSHP AK +LNK  PYYDEL YVFDRDRA G F +TF +VG NEP GYEGFDM+DGN+EF  +YSQGID+SQDD
Subjt:  PACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDD

Query:  VRAS
        VRAS
Subjt:  VRAS

A0A5A7V9L7 Retrotransposon protein2.2e-57100Show/hide
Query:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS
        MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS
Subjt:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS

Query:  QDDVRAS
        QDDVRAS
Subjt:  QDDVRAS

A0A5D3BQI7 Retrotransposon protein7.8e-3974.07Show/hide
Query:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNK-EFSSLYSQGIDI
        MR PACSGF WND+ KYII EK+V DNW+RSHP AK +LNK   YYDELAYVF+ DRATG FVETF ++G NEP GYEGFDMSDGN  EF  +YSQGIDI
Subjt:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNK-EFSSLYSQGIDI

Query:  SQDDVRAS
        SQDDVR S
Subjt:  SQDDVRAS

A0A5D3D831 Retrotransposon protein2.3e-3871.96Show/hide
Query:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS
        MR PACSGF WN++ K II EK++ DNWVRSHP AK +LNK   YYDEL YVFD DRAT  F ETF ++G NEP+GYEGFDM+DGN+EFSS+YSQGID+S
Subjt:  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDIS

Query:  QDDVRAS
        QDDVRAS
Subjt:  QDDVRAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein8.0e-0432.14Show/hide
Query:  GFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVF--DRDRATGH
        GF W++    I  +  V D++++ HP+A+    KSLP Y++L  +F    ++ T H
Subjt:  GFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVF--DRDRATGH

AT2G24960.2 unknown protein8.0e-0432.14Show/hide
Query:  GFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVF--DRDRATGH
        GF W++    I  +  V D++++ HP+A+    KSLP Y++L  +F    ++ T H
Subjt:  GFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVF--DRDRATGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTGGCCAGCATGCAGTGGGTTCTGCTGGAACGATGATGTAAAATACATAATTACGGAGAAGCAAGTCGTCGATAACTGGGTTAGGTCGCATCCTGTAGCAAAGGA
CATCCTTAACAAATCCTTGCCGTATTACGACGAACTTGCATATGTGTTCGATCGAGATAGGGCGACGGGTCACTTTGTTGAGACATTCACCAACGTCGGGTTTAACGAGC
CTAATGGGTATGAGGGGTTTGACATGTCGGATGGGAACAAAGAGTTTTCATCCTTGTACAGCCAAGGGATTGACATTTCCCAAGATGATGTACGTGCATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGTGGCCAGCATGCAGTGGGTTCTGCTGGAACGATGATGTAAAATACATAATTACGGAGAAGCAAGTCGTCGATAACTGGGTTAGGTCGCATCCTGTAGCAAAGGA
CATCCTTAACAAATCCTTGCCGTATTACGACGAACTTGCATATGTGTTCGATCGAGATAGGGCGACGGGTCACTTTGTTGAGACATTCACCAACGTCGGGTTTAACGAGC
CTAATGGGTATGAGGGGTTTGACATGTCGGATGGGAACAAAGAGTTTTCATCCTTGTACAGCCAAGGGATTGACATTTCCCAAGATGATGTACGTGCATCATGA
Protein sequenceShow/hide protein sequence
MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS