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IVF0001607 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001607
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr10:13258703..13259140
RNA-Seq ExpressionIVF0001607
SyntenyIVF0001607
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026281.1 reverse transcriptase [Cucumis melo var. makuwa]1.62e-8489.66Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGE A  +G+LGSLIAHFQVRPILIDRIIKAQLDDAM+RKLAEEVRQNQRLNYSLRGD A MKYDRLCVPSDQAIK QIL+EAHSSAYAMHPGSTKMYRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWP MK EIADYVAKCLICQQVKPE QRP  LLNPLPVLE
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

KAA0036812.1 reverse transcriptase [Cucumis melo var. makuwa]8.63e-8589.66Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGEVA  VGKLGSLIAHFQV+PILIDRIIK QLDDAMLRKLAE+VRQNQR NYSLRG  ALMKYDRLCVPSDQ IKDQILEEAHS AYA HPGSTKMYRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWPGMK EIADYVAKCLICQQVKPE QRP GLLNPLPV E
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

KAA0056222.1 reverse transcriptase [Cucumis melo var. makuwa]2.46e-8189.66Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGE A  VGKL SL+AHFQVRP LIDRIIKAQLDDA LRKLAEEVRQNQRLNYSLRGD ALMK DRLCVPSDQ IKDQILEEAHSSAYAMHPGSTK+YRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWPG+KREIADYVAKCLICQQVKPE QRP GLLNPLPV E
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

KAA0067054.1 putative Retrotransposon protein [Cucumis melo var. makuwa]6.10e-9999.31Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGEVAG VGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

TYK21477.1 reverse transcriptase [Cucumis melo var. makuwa]1.62e-8489.66Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGE A  +G+LGSLIAHFQVRPILIDRIIKAQLDDAM+RKLAEEVRQNQRLNYSLRGD A MKYDRLCVPSDQAIK QIL+EAHSSAYAMHPGSTKMYRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWP MK EIADYVAKCLICQQVKPE QRP  LLNPLPVLE
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

TrEMBL top hitse value%identityAlignment
A0A5A7SQ03 Reverse transcriptase2.4e-6789.66Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGE A  +G+LGSLIAHFQVRPILIDRIIKAQLDDAM+RKLAEEVRQNQRLNYSLRGD A MKYDRLCVPSDQAIK QIL+EAHSSAYAMHPGSTKMYRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWP MK EIADYVAKCLICQQVKPE QRP  LLNPLPVLE
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

A0A5A7T060 Reverse transcriptase1.8e-6789.66Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGEVA  VGKLGSLIAHFQV+PILIDRIIK QLDDAMLRKLAE+VRQNQR NYSLRG  ALMKYDRLCVPSDQ IKDQILEEAHS AYA HPGSTKMYRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWPGMK EIADYVAKCLICQQVKPE QRP GLLNPLPV E
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

A0A5A7UK27 Reverse transcriptase1.8e-6789.66Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGE A  VGKL SL+AHFQVRP LIDRIIKAQLDDA LRKLAEEVRQNQRLNYSLRGD ALMK DRLCVPSDQ IKDQILEEAHSSAYAMHPGSTK+YRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWPG+KREIADYVAKCLICQQVKPE QRP GLLNPLPV E
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

A0A5A7VI68 Putative Retrotransposon protein2.2e-7699.31Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGEVAG VGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

A0A5D3DCU0 Reverse transcriptase2.4e-6789.66Show/hide
Query:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT
        MGE A  +G+LGSLIAHFQVRPILIDRIIKAQLDDAM+RKLAEEVRQNQRLNYSLRGD A MKYDRLCVPSDQAIK QIL+EAHSSAYAMHPGSTKMYRT
Subjt:  MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRT

Query:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE
        LKKHYWWP MK EIADYVAKCLICQQVKPE QRP  LLNPLPVLE
Subjt:  LKKHYWWPGMKREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.1e-0823.33Show/hide
Query:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ
        ++++    +D  L  L     +    N  L+    +   D++ +P+D  +   I+++ H     +HPG   +   + + + W G++++I +YV  C  CQ
Subjt:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ

Query:  QVKPEHQRPTGLLNPLPVLE
          K  + +P G L P+P  E
Subjt:  QVKPEHQRPTGLLNPLPVLE

P0CT35 Transposon Tf2-2 polyprotein1.1e-0823.33Show/hide
Query:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ
        ++++    +D  L  L     +    N  L+    +   D++ +P+D  +   I+++ H     +HPG   +   + + + W G++++I +YV  C  CQ
Subjt:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ

Query:  QVKPEHQRPTGLLNPLPVLE
          K  + +P G L P+P  E
Subjt:  QVKPEHQRPTGLLNPLPVLE

P0CT36 Transposon Tf2-3 polyprotein1.1e-0823.33Show/hide
Query:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ
        ++++    +D  L  L     +    N  L+    +   D++ +P+D  +   I+++ H     +HPG   +   + + + W G++++I +YV  C  CQ
Subjt:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ

Query:  QVKPEHQRPTGLLNPLPVLE
          K  + +P G L P+P  E
Subjt:  QVKPEHQRPTGLLNPLPVLE

P0CT41 Transposon Tf2-12 polyprotein1.1e-0823.33Show/hide
Query:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ
        ++++    +D  L  L     +    N  L+    +   D++ +P+D  +   I+++ H     +HPG   +   + + + W G++++I +YV  C  CQ
Subjt:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ

Query:  QVKPEHQRPTGLLNPLPVLE
          K  + +P G L P+P  E
Subjt:  QVKPEHQRPTGLLNPLPVLE

Q9UR07 Transposon Tf2-11 polyprotein1.1e-0823.33Show/hide
Query:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ
        ++++    +D  L  L     +    N  L+    +   D++ +P+D  +   I+++ H     +HPG   +   + + + W G++++I +YV  C  CQ
Subjt:  DRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKREIADYVAKCLICQ

Query:  QVKPEHQRPTGLLNPLPVLE
          K  + +P G L P+P  E
Subjt:  QVKPEHQRPTGLLNPLPVLE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAAGTCGCTGGGCCAGTAGGCAAGTTGGGAAGTTTAATTGCACATTTCCAAGTGCGGCCTATTTTAATAGATCGTATTATTAAAGCCCAGCTAGATGATGCAAT
GCTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATAGTGCCTTAATGAAATATGATAGGTTGTGTGTACCCAGTGACCAAG
CGATTAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAATGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATG
AAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACATCAGAGACCAACGGGACTCCTAAATCCTCTTCCAGTGCTGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAAGTCGCTGGGCCAGTAGGCAAGTTGGGAAGTTTAATTGCACATTTCCAAGTGCGGCCTATTTTAATAGATCGTATTATTAAAGCCCAGCTAGATGATGCAAT
GCTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATAGTGCCTTAATGAAATATGATAGGTTGTGTGTACCCAGTGACCAAG
CGATTAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAATGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATG
AAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACATCAGAGACCAACGGGACTCCTAAATCCTCTTCCAGTGCTGGAATGA
Protein sequenceShow/hide protein sequence
MGEVAGPVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLNYSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGM
KREIADYVAKCLICQQVKPEHQRPTGLLNPLPVLE