CuGenDBv2

Gene ID	IVF0001621
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr02:13062730..13063081
RNA-Seq Expression	IVF0001621
Synteny	IVF0001621
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]

1.90e-50

76.07

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK
        MASTNSKATKHRWTTI DEVLV CLLQLVEEGGWRADNGTFK GYLVQ                     SR KILKKQY AIAEMMGPACSGFGWNEERK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK

Query:  CIEAEKSVFDDWVKVRR
        CIEAEKSVFDDWVK  R
Subjt:  CIEAEKSVFDDWVKVRR

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]

1.02e-47

71.93

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK
        MASTNSKATKHRWTTI+D+ LV CLLQLVEEGGWRA+N TFKP YLVQ                     SR K LKKQYTAIA+MMGPACS FGWNEERK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK

Query:  CIEAEKSVFDDWVK
        CIEAEKSVFDDWVK
Subjt:  CIEAEKSVFDDWVK

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]

2.30e-50

90.32

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK
        MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYL         KQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]

2.49e-47

71.93

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK
        MASTNSKATKHRWTTI+D+ LV CLLQLVEEGGWRA+N TFKP YLVQ                     SR K LKKQYTAIA+MMGPACS FGWNEERK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK

Query:  CIEAEKSVFDDWVK
        CIEAEKSVFDDWVK
Subjt:  CIEAEKSVFDDWVK

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]

6.15e-49

86.02

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK
        MAST SKATKHRWTTIEDE LV CLLQLVEEGGWRADNGTFKPGYL         KQYTAIAEMMG ACSGFGWNEERKCIEAEKSVFDDWVK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C252 uncharacterized protein At2g29880-like

1.0e-37

71.93

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK
        MASTNSKATKHRWTTI+D+ LV CLLQLVEEGGWRA+N TFKP YLVQ                     SR K LKKQYTAIA+MMGPACS FGWNEERK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK

Query:  CIEAEKSVFDDWVK
        CIEAEKSVFDDWVK
Subjt:  CIEAEKSVFDDWVK

A0A1S3CI24 uncharacterized protein At2g29880-like

3.5e-38

86.02

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK
        MAST SKATKHRWTTIEDE LV CLLQLVEEGGWRADNGTFKPGYL         KQYTAIAEMMG ACSGFGWNEERKCIEAEKSVFDDWVK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK

A0A5A7U7F7 Retrotransposon protein

6.3e-40

76.07

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK
        MASTNSKATKHRWTTI DEVLV CLLQLVEEGGWRADNGTFK GYLVQ                     SR KILKKQY AIAEMMGPACSGFGWNEERK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK

Query:  CIEAEKSVFDDWVKVRR
        CIEAEKSVFDDWVK  R
Subjt:  CIEAEKSVFDDWVKVRR

A0A5D3BC95 Retrotransposon protein

1.0e-37

71.93

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK
        MASTNSKATKHRWTTI+D+ LV CLLQLVEEGGWRA+N TFKP YLVQ                     SR K LKKQYTAIA+MMGPACS FGWNEERK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQ---------------------SREKILKKQYTAIAEMMGPACSGFGWNEERK

Query:  CIEAEKSVFDDWVK
        CIEAEKSVFDDWVK
Subjt:  CIEAEKSVFDDWVK

A0A5D3C542 Retrotransposon protein

2.0e-41

90.32

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Query:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK
        MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYL         KQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK
Subjt:  MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G02210.1 unknown protein

7.2e-04

31.37

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Query:  LVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR
        ++++R K L++Q+ AI  ++     GF W+ ER+ + A+ +V+ D++K  R
Subjt:  LVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR

AT4G02210.2 unknown protein

7.2e-04

31.37

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Query:  LVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR
        ++++R K L++Q+ AI  ++     GF W+ ER+ + A+ +V+ D++K  R
Subjt:  LVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR

Sequences

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CDS sequence

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ATGGCATCGACAAATTCAAAAGCCACCAAGCATCGGTGGACAACCATTGAGGATGAGGTGTTAGTTGGGTGCTTACTACAACTAGTGGAGGAAGGTGGCTGGAGGGCTGA
TAATGGAACATTCAAACCGGGATATTTGGTACAAAGTCGAGAGAAAATTTTAAAGAAGCAGTACACTGCCATAGCAGAGATGATGGGGCCAGCTTGTAGTGGGTTTGGCT
GGAATGAGGAACGAAAGTGCATTGAGGCAGAGAAATCCGTGTTTGATGATTGGGTTAAGGTAAGAAGATGA

mRNA sequence

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Protein sequence

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MASTNSKATKHRWTTIEDEVLVGCLLQLVEEGGWRADNGTFKPGYLVQSREKILKKQYTAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVKVRR

IVF0001621 (gene) of Melon (IVF77) v1 genome