CuGenDBv2

Gene ID	IVF0001629
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	rRNA 2'-O-methyltransferase fibrillarin 2
Genome location	chr12:14656421..14656764
RNA-Seq Expression	IVF0001629
Synteny	IVF0001629
Gene Ontology terms	GO:0000494 - box C/D snoRNA 3'-end processing (biological process) GO:1990258 - histone glutamine methylation (biological process) GO:0051321 - meiotic cell cycle (biological process) GO:0051225 - spindle assembly (biological process) GO:0031167 - rRNA methylation (biological process) GO:0031122 - cytoplasmic microtubule organization (biological process) GO:0007020 - microtubule nucleation (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005874 - microtubule (cellular component) GO:0005730 - nucleolus (cellular component) GO:0000930 - gamma-tubulin complex (cellular component) GO:0031428 - box C/D snoRNP complex (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0000923 - equatorial microtubule organizing center (cellular component) GO:0000922 - spindle pole (cellular component) GO:0008649 - rRNA methyltransferase activity (molecular function) GO:0003723 - RNA binding (molecular function) GO:0043015 - gamma-tubulin binding (molecular function) GO:0051011 - microtubule minus-end binding (molecular function) GO:1990259 - histone-glutamine methyltransferase activity (molecular function)
InterPro domains	IPR000692 - Fibrillarin IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase

Homology

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GenBank top hits

e value

%identity

Alignment

KGN57431.2 hypothetical protein Csa_009607 [Cucumis sativus]

7.14e-49

100

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

TYK00283.1 putative mediator of RNA polymerase II transcription subunit 36b [Cucumis melo var. makuwa]

9.21e-49

98.78

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKA A
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

XP_016903173.1 PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis melo]

2.76e-52

100

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Query:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

XP_022152767.1 mediator of RNA polymerase II transcription subunit 36a-like [Momordica charantia]

1.60e-51

98.8

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Query:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQK AA
Subjt:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

XP_022922917.1 probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita moschata]

1.15e-48

100

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLF9 Uncharacterized protein

3.3e-37

100

Show/hide

Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

A0A0A0L9V7 Uncharacterized protein

3.3e-37

100

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

A0A1S4E4L3 mediator of RNA polymerase II transcription subunit 36a-like

8.7e-38

100

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Query:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

A0A5D3CYG2 Mediator of RNA polymerase II transcription subunit 36a-like

8.7e-38

100

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Query:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

A0A6J1JA27 probable mediator of RNA polymerase II transcription subunit 36b

3.3e-37

100

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

SwissProt top hits

e value

%identity

Alignment

P35549 rRNA 2'-O-methyltransferase fibrillarin

9.6e-26

73.42

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQK
        QARILALNA  FL+ GGH+VISIKANCIDST+ A  V ASE+NKLK D+ KP EQV+LEPFERDHA VVG+YR  KK K
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQK

Q8I1F4 rRNA 2'-O-methyltransferase fibrillarin

1.9e-26

73.08

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQ
        Q RI+ALNA +FLK GGHFVISIKA+CIDST   EAVFASEV K++AD+ KP EQ+TLEP+ERDHA VVG+YR P KQ
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQ

Q94AH9 rRNA 2'-O-methyltransferase fibrillarin 2

3.6e-33

86.42

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA
        QARILALNASYFLK+GGHFVISIKANCIDSTVPAEAVF +EV KL+ +QFKP EQVTLEPFERDHACVVG YR PKK KAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA

Q9FEF8 rRNA 2'-O-methyltransferase fibrillarin 1

5.3e-32

84.15

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNAS+FLK GGHFVISIKANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG YR PKKQK  A
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

Q9W1V3 rRNA 2'-O-methyltransferase fibrillarin

4.3e-26

71.79

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQ
        Q RI+ALNA +FLK GGHFVISIKA+CIDST   EAVFA+EV K++AD+ KP EQ+TLEP+ERDHA VVG+YR P KQ
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQ

Arabidopsis top hits

e value

%identity

Alignment

AT4G25630.1 fibrillarin 2

2.6e-34

86.42

Show/hide

Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA
        QARILALNASYFLK+GGHFVISIKANCIDSTVPAEAVF +EV KL+ +QFKP EQVTLEPFERDHACVVG YR PKK KAA
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA

AT5G52470.1 fibrillarin 1

3.7e-33

84.15

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
        QARILALNAS+FLK GGHFVISIKANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG YR PKKQK  A
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

AT5G52490.1 Fibrillarin family protein

4.3e-21

61.04

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Query:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK
        QA IL+LNASYFLK+GGHF+ISIKAN IDST+ AE V+  EV KL+ ++ +PTE + L+  E  HACV G YR P+K
Subjt:  QARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK

Sequences

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CDS sequence

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ATGCAGGCAAGAATTTTGGCTCTTAATGCCTCATATTTTCTAAAAGCCGGTGGTCATTTTGTTATATCAATCAAGGCCAACTGCATAGACTCTACCGTTCCAGCAGAGGC
AGTGTTTGCAAGTGAGGTGAATAAGTTAAAAGCAGATCAGTTCAAACCGACTGAGCAAGTAACACTTGAACCATTCGAGCGAGATCATGCCTGTGTTGTCGGTATTTATC
GGGCGCCAAAGAAACAAAAGGCTGCTGCCTAG

mRNA sequence

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Protein sequence

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MQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

IVF0001629 (gene) of Melon (IVF77) v1 genome