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IVF0001646 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001646
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr01:17972800..17973156
RNA-Seq ExpressionIVF0001646
SyntenyIVF0001646
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052859.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.07e-4167.52Show/hide
Query:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQR
        MK+KESE VSDYITQ Q VVNQLK NG T KD R+VEKI  SLTNDF+NVVCA E+ KNLEEMT   L   +  +      KK TR P  G+TNKDDHQR
Subjt:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQR

Query:  RQGNVCTTQSRKRTWLR
        RQGNVCTTQSRK+TW R
Subjt:  RQGNVCTTQSRKRTWLR

KAA0060771.1 polyprotein [Cucumis melo var. makuwa]4.35e-6896.33Show/hide
Query:  SDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQRRQGNVCTTQ
        +D + QAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQRRQGNVCTTQ
Subjt:  SDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQRRQGNVCTTQ

Query:  SRKRTWLRW
        SRKRTWLRW
Subjt:  SRKRTWLRW

PKU61774.1 hypothetical protein MA16_Dca028474 [Dendrobium catenatum]3.54e-2265.06Show/hide
Query:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKK
        MKMKESEGVSDYIT+ Q VVNQLK NG+ L DARVVEKI  SLTN+FENVVCA EESK+L  +T   L   L+   +++K+KK
Subjt:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKK

PKU83305.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum]1.01e-2261.22Show/hide
Query:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDH
        MKMKESEGVSDYIT+ Q VVNQLK NG+ L DARVVEKI  SLTN+FENVVCA EESK+L  +T   L   L+  +++RK+KK  R  GRG   + +H
Subjt:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDH

XP_038878101.1 uncharacterized protein LOC120070273 isoform X4 [Benincasa hispida]2.88e-2278.12Show/hide
Query:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMT
        MKMKESE VS YIT+ Q VVNQLK NG+TL+DA+VVEKI  SLTNDF+NVVCA EESK LEEMT
Subjt:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMT

TrEMBL top hitse value%identityAlignment
A0A2I0X5W4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-1857.55Show/hide
Query:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQR
        MKMKESEGVSDYIT+ Q VVNQLK NG+ L DARVVEKI  SLTN+FENVVCA EESK+L  +T   L   L+  +++RK+KK  R  GRG   + +H  
Subjt:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQR

Query:  RQGNVC
         +   C
Subjt:  RQGNVC

A0A5D3C1S7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-3167.52Show/hide
Query:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQR
        MK+KESE VSDYITQ Q VVNQLK NG T KD R+VEKI  SLTNDF+NVVCA E+ KNLEEMT   L   +  +      KK TR P  G+TNKDDHQR
Subjt:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQR

Query:  RQGNVCTTQSRKRTWLR
        RQGNVCTTQSRK+TW R
Subjt:  RQGNVCTTQSRKRTWLR

A0A5D3CND8 Polyprotein2.6e-5196.33Show/hide
Query:  SDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQRRQGNVCTTQ
        +D + QAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQRRQGNVCTTQ
Subjt:  SDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQRRQGNVCTTQ

Query:  SRKRTWLRW
        SRKRTWLRW
Subjt:  SRKRTWLRW

A0A6A2XY19 Integrase catalytic domain-containing protein4.9e-1863.74Show/hide
Query:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRG
        M MKESEGVSDYIT  Q VVNQLK NG+TLKD+RVVEKI  SLT+DFENVVCA EESK+LEE+T   L   L+   + R   +  R  GRG
Subjt:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRG

A0A6A3CTC0 Integrase catalytic domain-containing protein3.2e-1766.27Show/hide
Query:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKK
        MKMKESEGVSD IT+ Q VVNQLK  G+TLKD+RVVEKI  SLT+DFENVVCA EESK+LEE+T   L   L+   + +K+KK
Subjt:  MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCAGGCTCAAATGGTGGTGAACCAACTTAAACACAATGGAGACACCCTCAAAGATGCAAGGGTTGTAGA
GAAAATCTTTCTATCATTGACAAATGACTTTGAAAATGTCGTATGTGCAACCGAGGAGTCAAAGAATTTGGAAGAAATGACTACGATGATCTTGCAAATTCCCTTGAAGC
ACATGAACAAAGAAAGAAAAGAAAAAAAAACAACAAGAGATCCTGGAAGGGGCATTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCG
AGGAAGAGGACGTGGTTAAGGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGAAGGAGTCAGAAGGAGTATCTGACTACATCACCCAGGCTCAAATGGTGGTGAACCAACTTAAACACAATGGAGACACCCTCAAAGATGCAAGGGTTGTAGA
GAAAATCTTTCTATCATTGACAAATGACTTTGAAAATGTCGTATGTGCAACCGAGGAGTCAAAGAATTTGGAAGAAATGACTACGATGATCTTGCAAATTCCCTTGAAGC
ACATGAACAAAGAAAGAAAAGAAAAAAAAACAACAAGAGATCCTGGAAGGGGCATTACAAACAAAGATGACCATCAAAGAAGACAAGGCAATGTATGCACAACACAATCG
AGGAAGAGGACGTGGTTAAGGTGGTGA
Protein sequenceShow/hide protein sequence
MKMKESEGVSDYITQAQMVVNQLKHNGDTLKDARVVEKIFLSLTNDFENVVCATEESKNLEEMTTMILQIPLKHMNKERKEKKTTRDPGRGITNKDDHQRRQGNVCTTQS
RKRTWLRW