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IVF0001657 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001657
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr09:7188430..7188821
RNA-Seq ExpressionIVF0001657
SyntenyIVF0001657
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.83e-4361.54Show/hide
Query:  MYSQGVDMSPDEMLGIW----------------KQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII
        +YSQGV MS DE+ GI                 K+G +HYE VEVI +A E  NDQLK I  WPK+KRATEVELR +VVKQLQDIP+LRS+ R KLMQI+
Subjt:  MYSQGVDMSPDEMLGIW----------------KQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII

Query:  FCSVDGIEGFLLCPTKLKLEYCNVLLEDNI
        F SV+ IEGFL  PTKLKLEYCN+LLE+N+
Subjt:  FCSVDGIEGFLLCPTKLKLEYCNVLLEDNI

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.09e-4465.62Show/hide
Query:  MYSQGVDMSPDEMLGIW----------------KQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII
        MYSQGV MSPDEM GI                 KQG +HYETVEVI++AIE  NDQLKAIA WPK+KRATEVELRA+V+KQLQDIPEL+SR R KL+QI+
Subjt:  MYSQGVDMSPDEMLGIW----------------KQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII

Query:  FCSVDGIEGFLLCPTKLKLEYCNVLLED
        F SV+ IEGFL  PT+ KLEYCN+LL++
Subjt:  FCSVDGIEGFLLCPTKLKLEYCNVLLED

KAA0040620.1 retrotransposon protein [Cucumis melo var. makuwa]6.04e-6391.23Show/hide
Query:  MYSQGVDMSPDEMLGIWKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFCSVDGIEGFLLCPTK
        MYSQGVDMSPDEMLGI          VEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFCSVDGIEGFLLCPTK
Subjt:  MYSQGVDMSPDEMLGIWKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFCSVDGIEGFLLCPTK

Query:  LKLEYCNVLLEDNI
        LKLEYCNVLLEDNI
Subjt:  LKLEYCNVLLEDNI

KAE8646815.1 hypothetical protein Csa_005367, partial [Cucumis sativus]9.07e-5068.5Show/hide
Query:  MYSQGVDMSPDEMLGIW--------------KQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFC
        MYSQG+DM PDEMLG                K GGQHYE V+VI N +E  NDQLKAIA W K+KRATEVEL  +VVKQLQDI ELR+R RVKLMQIIF 
Subjt:  MYSQGVDMSPDEMLGIW--------------KQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFC

Query:  SVDGIEGFLLCPTKLKLEYCNVLLEDN
         VD IEGFL CPTKLKLEYC VLLEDN
Subjt:  SVDGIEGFLLCPTKLKLEYCNVLLEDN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.92e-4361.72Show/hide
Query:  MYSQGVDMSPDEMLGIW----------------KQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII
        MYSQGV MSPDEM GI                 K+G + YETVEVIR+ +E  N+QLKAIA WPK+KRA EVE+RA+VVKQLQDIP+LRS+ R KLMQI+
Subjt:  MYSQGVDMSPDEMLGIW----------------KQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII

Query:  FCSVDGIEGFLLCPTKLKLEYCNVLLED
        F S++ IEGFL  PT+LKLEYCN+LL++
Subjt:  FCSVDGIEGFLLCPTKLKLEYCNVLLED

TrEMBL top hitse value%identityAlignment
A0A0A0KFW0 Uncharacterized protein2.7e-3767.97Show/hide
Query:  MYSQGVDMSPDEMLGI--------------WKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFC
        MYSQG+DM PDEMLG                K GGQHYE V+VI N +E  NDQLKAIA W K+KRATEVEL  +VVKQLQDI ELR+R RVKLMQIIF 
Subjt:  MYSQGVDMSPDEMLGI--------------WKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFC

Query:  SVDGIEGFLLCPTKLKLEYCNVLLEDNI
         VD IEGFL CPTKLKLEYC VLLEDN+
Subjt:  SVDGIEGFLLCPTKLKLEYCNVLLEDNI

A0A1S3B4L3 uncharacterized protein LOC1034859531.0e-3361.72Show/hide
Query:  MYSQGVDMSPDEMLGI----------------WKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII
        MYSQGV MSPDEM GI                 K+G + YETVEVIR+ +E  N+QLKAIA WPK+KRA EVE+RA+VVKQLQDIP+LRS+ R KLMQI+
Subjt:  MYSQGVDMSPDEMLGI----------------WKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII

Query:  FCSVDGIEGFLLCPTKLKLEYCNVLLED
        F S++ IEGFL  PT+LKLEYCN+LL++
Subjt:  FCSVDGIEGFLLCPTKLKLEYCNVLLED

A0A5A7SQU2 Putative nuclease HARBI12.9e-3665.62Show/hide
Query:  MYSQGVDMSPDEMLGI----------------WKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII
        MYSQGV MSPDEM GI                 KQG +HYETVEVI++AIE  NDQLKAIA WPK+KRATEVELRA+V+KQLQDIPEL+SR R KL+QI+
Subjt:  MYSQGVDMSPDEMLGI----------------WKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII

Query:  FCSVDGIEGFLLCPTKLKLEYCNVLLED
        F SV+ IEGFL  PT+ KLEYCN+LL++
Subjt:  FCSVDGIEGFLLCPTKLKLEYCNVLLED

A0A5A7U0H7 Retrotransposon protein1.0e-3361.72Show/hide
Query:  MYSQGVDMSPDEMLGI----------------WKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII
        MYSQGV MSPDEM GI                 K+G + YETVEVIR+ +E  N+QLKAIA WPK+KRA EVE+RA+VVKQLQDIP+LRS+ R KLMQI+
Subjt:  MYSQGVDMSPDEMLGI----------------WKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQII

Query:  FCSVDGIEGFLLCPTKLKLEYCNVLLED
        F S++ IEGFL  PT+LKLEYCN+LL++
Subjt:  FCSVDGIEGFLLCPTKLKLEYCNVLLED

A0A5D3C1H4 Retrotransposon protein3.3e-4891.23Show/hide
Query:  MYSQGVDMSPDEMLGIWKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFCSVDGIEGFLLCPTK
        MYSQGVDMSPDEMLGI          VEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFCSVDGIEGFLLCPTK
Subjt:  MYSQGVDMSPDEMLGIWKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFCSVDGIEGFLLCPTK

Query:  LKLEYCNVLLEDNI
        LKLEYCNVLLEDNI
Subjt:  LKLEYCNVLLEDNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGCCAAGGAGTGGATATGTCACCAGATGAGATGTTAGGAATATGGAAACAAGGTGGCCAACATTATGAAACAGTAGAGGTGATCAGGAATGCAATCGAATCTGC
AAATGATCAATTAAAGGCAATTGCATATTGGCCAAAACAAAAGCGTGCAACAGAGGTCGAATTGCGTGCTAAAGTCGTGAAACAGTTGCAAGATATCCCTGAACTACGGA
GTCGAGGGAGGGTAAAGCTTATGCAAATCATATTCTGTAGTGTAGATGGCATAGAAGGATTCTTGTTATGTCCAACAAAACTTAAATTGGAGTATTGCAATGTTCTTTTG
GAAGATAATATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATAGCCAAGGAGTGGATATGTCACCAGATGAGATGTTAGGAATATGGAAACAAGGTGGCCAACATTATGAAACAGTAGAGGTGATCAGGAATGCAATCGAATCTGC
AAATGATCAATTAAAGGCAATTGCATATTGGCCAAAACAAAAGCGTGCAACAGAGGTCGAATTGCGTGCTAAAGTCGTGAAACAGTTGCAAGATATCCCTGAACTACGGA
GTCGAGGGAGGGTAAAGCTTATGCAAATCATATTCTGTAGTGTAGATGGCATAGAAGGATTCTTGTTATGTCCAACAAAACTTAAATTGGAGTATTGCAATGTTCTTTTG
GAAGATAATATTTGA
Protein sequenceShow/hide protein sequence
MYSQGVDMSPDEMLGIWKQGGQHYETVEVIRNAIESANDQLKAIAYWPKQKRATEVELRAKVVKQLQDIPELRSRGRVKLMQIIFCSVDGIEGFLLCPTKLKLEYCNVLL
EDNI