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IVF0001668 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001668
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPol protein
Genome locationchr08:16025522..16025761
RNA-Seq ExpressionIVF0001668
SyntenyIVF0001668
Gene Ontology termsNA
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043066.1 pol protein [Cucumis melo var. makuwa]9.54e-4996.2Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
        MLRKYVPDPSHVVDYEPLEID+NLSY EQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMR RYPELFEG
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG

KAA0053161.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.51e-4898.72Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        MLRKYVPDPSHVVDYEPLEID+NLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

KAA0053367.1 pol protein [Cucumis melo var. makuwa]2.15e-4898.72Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        MLRKYVPDPSHVVDYEPLEID+NLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

KAA0054732.1 pol protein [Cucumis melo var. makuwa]2.15e-4898.72Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
        MLRKYVPDPSHVVDYEPLEID+NLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFE

KAA0059750.1 pol protein [Cucumis melo var. makuwa]2.20e-4894.94Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
        MLRKYVPDPSHVVDYEPLEID+NLSY EQP+EVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYP+LFEG
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG

TrEMBL top hitse value%identityAlignment
A0A5A7SSB3 Pol protein1.6e-3697.47Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
        MLRKYVPDPSHVVDYEPLEID+NLSYTEQPVEVLAREVKTLRNKEIPLVKVLW+NHRVEEATWEREDDMRSRYPELFEG
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG

A0A5A7T8G8 Reverse transcriptase5.4e-3798.73Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
        MLRKYVPDPSHVVDYEPLEID+NLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG

A0A5A7TGX4 Reverse transcriptase2.0e-3697.47Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
        MLRKYVPDPSHVVDYEPLEID+NLSY EQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG

A0A5A7UDB1 Reverse transcriptase2.0e-3697.47Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
        MLRKYVPDPSHVVDYEPLEID+NLSYTEQPVEVLAREVKTLR+KEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG

A0A5A7UZZ4 Pol protein1.6e-3694.94Show/hide
Query:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG
        MLRKYVPDPSHVVDYEPLEID+N+SYTEQPVE+LAREVKTLRNKEIPLVKVLWRNHR+EEATWEREDDMRSRYPELFEG
Subjt:  MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTGGAGATTGATCAAAACTTGAGCTATACTGAACAACCTGTTGAGGTGCTTGCTAGAGA
GGTGAAAACGTTGAGGAATAAAGAAATCCCTCTGGTTAAAGTCTTGTGGCGGAATCACCGGGTAGAAGAGGCTACGTGGGAGCGAGAAGATGACATGAGGTCCCGTTATC
CCGAACTGTTCGAGGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTGGAGATTGATCAAAACTTGAGCTATACTGAACAACCTGTTGAGGTGCTTGCTAGAGA
GGTGAAAACGTTGAGGAATAAAGAAATCCCTCTGGTTAAAGTCTTGTGGCGGAATCACCGGGTAGAAGAGGCTACGTGGGAGCGAGAAGATGACATGAGGTCCCGTTATC
CCGAACTGTTCGAGGGATAA
Protein sequenceShow/hide protein sequence
MLRKYVPDPSHVVDYEPLEIDQNLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEG