; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0001678 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001678
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:12852983..12853150
RNA-Seq ExpressionIVF0001678
SyntenyIVF0001678
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038851.1 retrotransposon protein [Cucumis melo var. makuwa]8.25e-2683.64Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYC+DV+DEDE DSTY TTT S+DIQYIETTNEWSQWRDDLA SMFTDWQ R A
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
KAA0058871.1 retrotransposon protein [Cucumis melo var. makuwa]7.22e-2789.09Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYCEDVDDEDE DSTY TTT S+DIQYIETTNEWSQWRDDLAESMFT+WQLR A
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
KAA0062284.1 retrotransposon protein [Cucumis melo var. makuwa]1.46e-2685.45Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYC+D+DDEDE DSTY TTT S+DIQYIETTNEWSQWRDDLAESMFT+WQLR A
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
KAA0066941.1 retrotransposon protein [Cucumis melo var. makuwa]3.66e-30100Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
TYK05336.1 retrotransposon protein [Cucumis melo var. makuwa]2.52e-2789.09Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYCEDVDDEDE DSTY TTT S+DIQYIETTNEWSQWRDDLAESMFTDWQLR +
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
TrEMBL top hitse value%identityAlignment
A0A5A7ST53 Retrotransposon protein1.2e-1989.09Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYCEDVDDEDE DSTY TTT S+DIQYIETTNEWSQWRDDLAESMFTDWQLR +
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
A0A5A7SZH3 Retrotransposon protein3.5e-1987.27Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYCEDVDDED+ DSTY TTT S+DIQYIETTNEWSQWRDDLAESMFT+WQLR A
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
A0A5A7UZF0 Retrotransposon protein2.7e-1989.09Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYCEDVDDEDE DSTY TTT S+DIQYIETTNEWSQWRDDLAESMFT+WQLR A
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
A0A5D3C4P9 Retrotransposon protein1.2e-1989.09Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYCEDVDDEDE DSTY TTT S+DIQYIETTNEWSQWRDDLAESMFTDWQLR +
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
A0A5D3E2V3 Retrotransposon protein6.8e-23100Show/hide
Query:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
        MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
Subjt:  MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATATTGCGAGGACGTTGACGATGAGGATGAGAGGGACTCCACGTACACGACGACCACCGTTTCAAAAGACATTCAGTACATTGAAACAACAAACGAGTGGTCTCA
GTGGCGCGACGATCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAAAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATATTGCGAGGACGTTGACGATGAGGATGAGAGGGACTCCACGTACACGACGACCACCGTTTCAAAAGACATTCAGTACATTGAAACAACAAACGAGTGGTCTCA
GTGGCGCGACGATCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAAAGCTTAG
Protein sequenceShow/hide protein sequence
MTYCEDVDDEDERDSTYTTTTVSKDIQYIETTNEWSQWRDDLAESMFTDWQLRKA