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IVF0001711 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001711
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibonuclease H
Genome locationchr12:2336163..2336789
RNA-Seq ExpressionIVF0001711
SyntenyIVF0001711
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033845.1 uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa]1.71e-150100Show/hide
Query:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
        MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
Subjt:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS

Query:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT
        SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT
Subjt:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT

Query:  LSTMFNVV
        LSTMFNVV
Subjt:  LSTMFNVV

KAA0056621.1 uncharacterized protein E6C27_scaffold288G001400 [Cucumis melo var. makuwa]6.44e-9461.84Show/hide
Query:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
        MDPIKYIFEK SL GRIAKWQVLL E+DI+YVT+KA+KGSA+ + LA  PV DYEPM+I+FPDE++ +V    +D E WTM FDGA+NE+GHG+G +L S
Subjt:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS

Query:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT
         + K +PL  KL F+CTHN+AEYEAC MG+Q+A+DM IKKL+V  DS+L +HQ+  EWET D+KL+PY +Y+ +L+QNFE I+F HVP E+N++A+ALAT
Subjt:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT

Query:  LSTMFNV
        L+ MF++
Subjt:  LSTMFNV

TYK07551.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]1.39e-9061.84Show/hide
Query:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
        MDPIKYIFEK SL GRIAKWQVLL EYDI+YVT+KA+KGSA+ D LA  PV DYEPM+I+FP+E++ +V    +D E WTM FDGA+NE+GH +G +L S
Subjt:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS

Query:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT
         +GK +PLT KL F+CT N+AEYEAC M +Q+A DM IKKL+V  D  L IHQ+  EWET D+KL+PY +Y+ +L+QNFE I+F HVP E+N++A+ALAT
Subjt:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT

Query:  LSTMFNV
        L  MF++
Subjt:  LSTMFNV

XP_008447313.1 PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo]2.35e-9665.7Show/hide
Query:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
        MDPIKYIFEK SL  +IAKW VLLLE+DI+Y+TRKA+KGS IVDCL   P+EDYEPMK +F DED+M + +T  DT  WTM FD ATN+VGHG+G  L S
Subjt:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS

Query:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT
         D K YP TTKLYFDCT+NM EY+ACSMGV++AY+MKIK L+V  DSLL +H+LNGE+ET D+K IPY+ YI  +AQ F+SI F+H+PC++NQ+ + LAT
Subjt:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT

Query:  LSTMFNV
        LS MFNV
Subjt:  LSTMFNV

XP_016899404.1 PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo]1.64e-10084.3Show/hide
Query:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
        MDPIKYIFEK SL GRIAKWQVL  EYDIIYVTR  +KGSAI DCLA+ PVEDYE MK EF DEDVM VSDT QDTEIWTMFFDGATNEVGHGVGAILT 
Subjt:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS

Query:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYI
         DGKSYPLT KLYFDCT+NMAEYE CSMGV+MAYD+KIKKLQVY DSLL IHQLN EWET DSKLIPY+KYI
Subjt:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYI

TrEMBL top hitse value%identityAlignment
A0A1S3BH42 uncharacterized protein LOC1034897844.1e-7665.7Show/hide
Query:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
        MDPIKYIFEK SL  +IAKW VLLLE+DI+Y+TRKA+KGS IVDCL   P+EDYEPMK +F DED+M + +T  DT  WTM FD ATN+VGHG+G  L S
Subjt:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS

Query:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT
         D K YP TTKLYFDCT+NM EY+ACSMGV++AY+MKIK L+V  DSLL +H+LNGE+ET D+K IPY+ YI  +AQ F+SI F+H+PC++NQ+ + LAT
Subjt:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT

Query:  LSTMFNV
        LS MFNV
Subjt:  LSTMFNV

A0A1S4DTT9 uncharacterized protein LOC1079905052.8e-7784.3Show/hide
Query:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
        MDPIKYIFEK SL GRIAKWQVL  EYDIIYVTR  +KGSAI DCLA+ PVEDYE MK EF DEDVM VSDT QDTEIWTMFFDGATNEVGHGVGAILT 
Subjt:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS

Query:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYI
         DGKSYPLT KLYFDCT+NMAEYE CSMGV+MAYD+KIKKLQVY DSLL IHQLN EWET DSKLIPY+KYI
Subjt:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYI

A0A5A7U7X5 Ribonuclease H2.4e-7671.88Show/hide
Query:  RIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTSSDGKSYPLTTKLYFD
        RIAKWQVLL E+DI+Y+TRKA+KGS I DCLA  P+EDYEPMK +FPDED+M + +T  +T  WTM FDGATNE+GHGVG IL S DGK YPLT KLYFD
Subjt:  RIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTSSDGKSYPLTTKLYFD

Query:  CTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALATLSTMFNV
        CT+NMAEYEACSMGV+MAY+MKIKKL+V  DS+L +HQLNGEWET D+KLIPY+ YI  +AQ F SITF+HVP E+NQ+ +ALATLS MFNV
Subjt:  CTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALATLSTMFNV

A0A5A7UKV4 Retrovirus-related Pol polyprotein from transposon 17.62.8e-7784.3Show/hide
Query:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
        MDPIKYIFEK SL GRIAKWQVL  EYDIIYVTR  +KGSAI DCLA+ PVEDYE MK EF DEDVM VSDT QDTEIWTMFFDGATNEVGHGVGAILT 
Subjt:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS

Query:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYI
         DGKSYPLT KLYFDCT+NMAEYE CSMGV+MAYD+KIKKLQVY DSLL IHQLN EWET DSKLIPY+KYI
Subjt:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYI

A0A5D3BPI8 RNase H domain-containing protein2.4e-116100Show/hide
Query:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
        MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS
Subjt:  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTS

Query:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT
        SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT
Subjt:  SDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALAT

Query:  LSTMFNVV
        LSTMFNVV
Subjt:  LSTMFNVV

SwissProt top hitse value%identityAlignment
Q9HSF6 Ribonuclease HI1.6e-0834.17Show/hide
Query:  FFDGAT--NEVGHGVGAILTSSDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNF
        +FDGA+  N     VG +L S DG             T+N AEY+A    ++ A D     +++  DS L   QL G W+T D  L       REL   F
Subjt:  FFDGAT--NEVGHGVGAILTSSDGKSYPLTTKLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNF

Query:  ESITFKHVPCENNQIANALA
        +  +  HVP   N+ A+ALA
Subjt:  ESITFKHVPCENNQIANALA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTATAAAGTACATTTTTGAAAAGTCATCCTTGTTTGGACGAATAGCTAAATGGCAGGTGTTGCTATTAGAGTATGATATCATCTATGTTACAAGAAAGGCCAT
GAAAGGAAGTGCAATCGTCGATTGTTTAGCTAATTTTCCAGTTGAAGACTATGAACCAATGAAAATTGAATTTCCAGATGAAGACGTCATGATAGTATCAGATACACTGC
AAGATACAGAAATATGGACAATGTTCTTTGATGGAGCCACAAATGAGGTAGGACATGGTGTGGGGGCTATTCTAACATCTTCTGATGGAAAATCGTATCCTCTAACTACT
AAGTTGTACTTTGATTGCACACATAACATGGCGGAATATGAAGCATGCAGTATGGGAGTTCAAATGGCCTATGACATGAAGATTAAGAAGTTGCAAGTTTATAGAGATTC
TCTCTTAGCAATACATCAGCTCAATGGGGAATGGGAGACAATAGACTCTAAATTGATTCCCTACGACAAGTATATTCGAGAATTGGCTCAAAATTTCGAGTCAATCACAT
TCAAGCATGTCCCATGTGAAAATAATCAAATAGCAAATGCATTAGCTACTCTATCTACCATGTTTAATGTGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTATAAAGTACATTTTTGAAAAGTCATCCTTGTTTGGACGAATAGCTAAATGGCAGGTGTTGCTATTAGAGTATGATATCATCTATGTTACAAGAAAGGCCAT
GAAAGGAAGTGCAATCGTCGATTGTTTAGCTAATTTTCCAGTTGAAGACTATGAACCAATGAAAATTGAATTTCCAGATGAAGACGTCATGATAGTATCAGATACACTGC
AAGATACAGAAATATGGACAATGTTCTTTGATGGAGCCACAAATGAGGTAGGACATGGTGTGGGGGCTATTCTAACATCTTCTGATGGAAAATCGTATCCTCTAACTACT
AAGTTGTACTTTGATTGCACACATAACATGGCGGAATATGAAGCATGCAGTATGGGAGTTCAAATGGCCTATGACATGAAGATTAAGAAGTTGCAAGTTTATAGAGATTC
TCTCTTAGCAATACATCAGCTCAATGGGGAATGGGAGACAATAGACTCTAAATTGATTCCCTACGACAAGTATATTCGAGAATTGGCTCAAAATTTCGAGTCAATCACAT
TCAAGCATGTCCCATGTGAAAATAATCAAATAGCAAATGCATTAGCTACTCTATCTACCATGTTTAATGTGGTTTAA
Protein sequenceShow/hide protein sequence
MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIEFPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTSSDGKSYPLTT
KLYFDCTHNMAEYEACSMGVQMAYDMKIKKLQVYRDSLLAIHQLNGEWETIDSKLIPYDKYIRELAQNFESITFKHVPCENNQIANALATLSTMFNVV