; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0001716 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001716
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:22873865..22874578
RNA-Seq ExpressionIVF0001716
SyntenyIVF0001716
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033278.1 hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa]4.50e-3649.57Show/hide
Query:  PRGSSPS---CSSSHICC----SREDLHHHVHLTYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGS
        PRGSS S   C   H+C     SREDLHH   L  +AVERIFI IF S MLQPRGSS SSS  +CCS++D H H HL  VAA++IFI IF SH+ + RGS
Subjt:  PRGSSPS---CSSSHICC----SREDLHHHVHLTYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGS

Query:  SSSSSSHK---CCSREDLHHHLHLTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHLQCVVAEEIINFIFSQMLRPRKSSSSSSHICYSR
        SSSSSS     CC                ERI  I+FIF H  Q   SS  SSS + C+R+ H LHL C  AE +I FIF    + R  SSSSS +  SR
Subjt:  SSSSSSHK---CCSREDLHHHLHLTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHLQCVVAEEIINFIFSQMLRPRKSSSSSSHICYSR

Query:  EDHHLHLLIYVAAKRIITIMFIFSHMLQPR
        + H LHL    A      I+FIF H  Q R
Subjt:  EDHHLHLLIYVAAKRIITIMFIFSHMLQPR

KAA0039121.1 hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa]3.37e-7166.25Show/hide
Query:  MLQPRGSSPSCSSSHICCSREDLHHHVHLTYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHL-TYVAAERIFIIIFISHMLQPRGSSSS
        +LQPRGSS S  SS++C SRED H H+ LT +  ERI I IF SHMLQ RGSSSSSS H+CCSRED  HHLHL T VA ERI I IF SH+LQ +GSSS 
Subjt:  MLQPRGSSPSCSSSHICCSREDLHHHVHLTYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHL-TYVAAERIFIIIFISHMLQPRGSSSS

Query:  SSSHKCCSREDLHHHLHL-TNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHL-QCVVAEEIINFIFSQMLRPRKSSSSSSHICYSREDHH
        SS H  CSR+D  HHLHL T VA ERI  I+FIFSH+LQL GSS PSS  MC + +DHHLHL  C+  E IINF FS +L+ R SSS SSHIC  +EDHH
Subjt:  SSSHKCCSREDLHHHLHL-TNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHL-QCVVAEEIINFIFSQMLRPRKSSSSSSHICYSREDHH

Query:  LHLLIYVAAKRIITIMFIFSHMLQPRGSSSSCSSSHICCS
        LHLL  VA KRII  +FIFSH+LQ RGSSSS  SSH+CCS
Subjt:  LHLLIYVAAKRIITIMFIFSHMLQPRGSSSSCSSSHICCS

KAA0045115.1 hypothetical protein E6C27_scaffold30G001110 [Cucumis melo var. makuwa]1.13e-3652.68Show/hide
Query:  VERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGSSSSSSSHKCCSREDLHHHLHL-TNVAAERIFSIMFIF
        VE+I  I   SHMLQPRGSSSSSS ++CC+R+DLH    LTYV+AERI I IF SH+LQPRGS SSSS   C ++ED  HHLHL T  A ERIF  +FIF
Subjt:  VERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGSSSSSSSHKCCSREDLHHHLHL-TNVAAERIFSIMFIF

Query:  SHMLQLGGSSPPSSSSMCCNREDHHLHLQCVVAEEIINFIFSQMLRPRKSSSSSSHICYSREDHHLHLLIYVAAKRIITIMFIFSHMLQPRGSSSSCSSS
        SHMLQL  SS  SS                 + E I  FIFS +L+P              ED  LHLL  V  +RI    FIFSH+LQP+GSSSS    
Subjt:  SHMLQLGGSSPPSSSSMCCNREDHHLHLQCVVAEEIINFIFSQMLRPRKSSSSSSHICYSREDHHLHLLIYVAAKRIITIMFIFSHMLQPRGSSSSCSSS

Query:  HICCS
        H+CCS
Subjt:  HICCS

KAA0047505.1 hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa]2.01e-5053.04Show/hide
Query:  MLQPRGSSPSCSSSHICCSREDLH----------HHVHL-TYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFI-S
        +LQPRGSS S  SSHICCSRE+ H          HH+HL T +AVERI I IF SHMLQ R SS SSS+   C  ++ HH   LT VA E+IFI  FI S
Subjt:  MLQPRGSSPSCSSSHICCSREDLH----------HHVHL-TYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFI-S

Query:  HMLQPRGSSSSSSSHKCCSREDLHHHLHLTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHLQCV--------------VAEEIINFIFS
        H LQPRG  SS SS +  SRED  HHLHL +VAAERIF    IF HMLQ  GSS  SSSSMCC++EDHHL LQC                 E II FIF+
Subjt:  HMLQPRGSSSSSSSHKCCSREDLHHHLHLTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHLQCV--------------VAEEIINFIFS

Query:  QMLRPRKSSSSSSHICYSREDHHLHLLIYVAAKRIITIMFIFSHMLQ
          +  +K SSSSS +  SR D HLHL    A   II I+ +  H L 
Subjt:  QMLRPRKSSSSSSHICYSREDHHLHLLIYVAAKRIITIMFIFSHMLQ

TYK02186.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.16e-4855.79Show/hide
Query:  MLQPRGSSPSCSSSHICCSREDLHHHVHL-TYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGSSSS
        +LQPRGSS S  SSHICCSRED  HH+HL T +A ER  I IF SH+LQ RGSSSSS  HIC SRE+LH +L  TY                  +GS SS
Subjt:  MLQPRGSSPSCSSSHICCSREDLHHHVHL-TYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGSSSS

Query:  SSSHKCCSREDLH-------HHLHL-TNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLH---LQCVVAEEIINFIF--SQMLRPR--KSSS
        SS   CCS++DLH       HHLHL T  AA+RI  I+FIF+ + Q G  S  SSS + C+RED HLH   L CV AE+II FIF  S +L+PR   SSS
Subjt:  SSSHKCCSREDLH-------HHLHL-TNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLH---LQCVVAEEIINFIF--SQMLRPR--KSSS

Query:  SSSHICYSREDHHLHL--LIYVAAKRIITIMFIFSHMLQPRG
        SSSH+C SR+D HLHL  L  VAA+RII  +FIFSH+LQP+G
Subjt:  SSSHICYSREDHHLHL--LIYVAAKRIITIMFIFSHMLQPRG

TrEMBL top hitse value%identityAlignment
A0A5A7TBX4 Uncharacterized protein2.4e-5664.32Show/hide
Query:  MLQPRGSSPSCSSSHICCSREDLHHHVHL-TYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHL-TYVAAERIFIIIFISHMLQPRGSSS
        MLQ RGS  S SSSH+CCSRED  HH+HL T +A+ERI I IF SH+LQ +G SSS SSH+ CSR+D  HHLHL T VA ERI I IF SH+LQ +G SS
Subjt:  MLQPRGSSPSCSSSHICCSREDLHHHVHL-TYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHL-TYVAAERIFIIIFISHMLQPRGSSS

Query:  SSSSHKCCSREDLHHHLH-LTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLH-LQCVVAEEIINFIFSQMLRPRKSSSSSSHICYSREDH
        S SSH C S +D  HHLH LT +A ERI  I F FSH+LQL GSS   SS +CC +EDHHLH L CV  + II FIFS +L+ R SSSSSSH+C SREDH
Subjt:  SSSSHKCCSREDLHHHLH-LTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLH-LQCVVAEEIINFIFSQMLRPRKSSSSSSHICYSREDH

Query:  HLHLLIYVAAKRIITIMFIFSHMLQPRGSSSSCSSSHICCS
        HLHLL  VA ++I  I+FIFSH+LQ RGSSS  SSSH+CCS
Subjt:  HLHLLIYVAAKRIITIMFIFSHMLQPRGSSSSCSSSHICCS

A0A5A7TUQ7 Uncharacterized protein7.2e-2957.58Show/hide
Query:  IIIFISHMLQPRGSSSSSSSHKCCSREDLHHHLHLTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHLQCVVA-EEIINFIFSQMLRPRK
        II   SHMLQPRG SSSSSS+ CC+R+DLH    LT V+AERI  I+FIFSH+LQ  GS   SSSSMC N+EDHHLHL    A E I  FIFS ML+ R 
Subjt:  IIIFISHMLQPRGSSSSSSSHKCCSREDLHHHLHLTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHLQCVVA-EEIINFIFSQMLRPRK

Query:  SSSSSSHI---------CYSREDHHLHLLIYVAAKRIITIMFIFSHMLQPRGSSSSCSSSHICCS
        SSSSSSHI          +  +   LHLL  V  +RI    FIFSH+LQP+GS    SSSH+CCS
Subjt:  SSSSSSHI---------CYSREDHHLHLLIYVAAKRIITIMFIFSHMLQPRGSSSSCSSSHICCS

A0A5A7U1J1 Uncharacterized protein5.3e-4053.25Show/hide
Query:  MLQPRGSSPSCSSSHICCSREDLH----------HHVHL-TYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFI-S
        +LQPRGS  S SSSHICCSRE+ H          HH+HL T +AVERI I IF SHMLQ R SS SSS+   C  ++ HH   LT VA E+IFI  FI S
Subjt:  MLQPRGSSPSCSSSHICCSREDLH----------HHVHL-TYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFI-S

Query:  HMLQPRGSSSSSSSHKCCSREDLHHHLHLTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHLQCV--------------VAEEIINFIFS
        H LQPRG  SS SS +  SRED  HHLHL +VAAERI    FIF HMLQ  GSS  SSSSMCC++EDHHL LQC                 E II FIF+
Subjt:  HMLQPRGSSSSSSSHKCCSREDLHHHLHLTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHLQCV--------------VAEEIINFIFS

Query:  QMLRPRKSSSSSSHICYSREDHHLHLLIYVAAKRIITIMFIFSHML
          +  +K SSSSS +  SR D HLHL    A   II I+ +  H L
Subjt:  QMLRPRKSSSSSSHICYSREDHHLHLLIYVAAKRIITIMFIFSHML

A0A5A7V7A0 Retrotransposon gag protein8.5e-3049.77Show/hide
Query:  IAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGSSSS---SSSHKCCSREDLHHHLHLTNVAAERIFSI
        +  +RIF  IF SH+LQ R   SSSSSH+ CS+EDLH HL L  VAAERIFI I IS+MLQ + SSS    SSS  CC R        L  VAAE+I  +
Subjt:  IAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGSSSS---SSSHKCCSREDLHHHLHLTNVAAERIFSI

Query:  MFIFSHMLQLGGSSPP--SSSSMCCNREDHHLHLQCVVAEEII----NFIFSQMLRPRKSSSSSSHICYSREDHHLHLLIYVAAKRIITIMFIFSHMLQP
         ++ +  + +     P  SSS +C N+ED    L+ V A++I       + S ML+PR+SSS    +CYSREDHHLHLL YVA + I  I+FIFSH+LQP
Subjt:  MFIFSHMLQLGGSSPP--SSSSMCCNREDHHLHLQCVVAEEII----NFIFSQMLRPRKSSSSSSHICYSREDHHLHLLIYVAAKRIITIMFIFSHMLQP

Query:  RGSSSSCSSSHICCS
        RGSS   S  H CC+
Subjt:  RGSSSSCSSSHICCS

A0A5D3BVC5 Retrotransposon gag protein3.7e-4155.37Show/hide
Query:  MLQPRGSSPSCSSSHICCSREDLHHHVH-LTYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGSSSS
        +LQPRGS  S SSSHICCSRED  HH+H LT +A ER FII   SH+LQ RG SSSSS HIC SRE+LH +L  TY                     S S
Subjt:  MLQPRGSSPSCSSSHICCSREDLHHHVH-LTYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGSSSS

Query:  SSSHKCCSREDLH-------HHLH-LTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLH---LQCVVAEEII--NFIFSQMLRPR--KSSS
        SSS  CCS++DLH       HHLH LT  AA+RI  I+FIF+ + Q G  S  SSS + C+RED HLH   L CV AE+II   FIFS +L+PR   SSS
Subjt:  SSSHKCCSREDLH-------HHLH-LTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLH---LQCVVAEEII--NFIFSQMLRPR--KSSS

Query:  SSSHICYSREDHHLH--LLIYVAAKRIITIMFIFSHMLQPRG
        SSSH+C SR+D HLH  LL  VAA+RII  +FIFSH+LQP+G
Subjt:  SSSHICYSREDHHLH--LLIYVAAKRIITIMFIFSHMLQPRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGCCAAGAGGATCATCACCATCATGTTCATCTTCTCACATATGTTGCAGCCGAGAGGATCTTCATCATCATGTTCATCTCACATATATTGCAGTCGAGAGGAT
CTTCATCATCATCTTCATCTCACATATGTTGCAGCCGAGAGGATCTTCATCATCATCTTCATCTCACATATGTTGCAGCCGAGAGGATCTTCATCATCATCTTCATCTCA
CATATGTTGCAGCTGAGAGGATCTTCATCATCATCTTCATCTCACATATGTTGCAGCCGAGAGGATCTTCTTCATCATCTTCATCTCACAAATGTTGCAGCCGAGAGGAT
CTTCATCATCATCTTCATCTCACAAATGTTGCAGCCGAGAGGATCTTCAGCATTATGTTCATCTTCTCACATATGTTGCAGCTGGGAGGATCTTCACCACCATCATCATC
TTCAATGTGTTGCAACAGAGAGGATCATCATCTTCATCTTCAATGTGTTGTAGCGGAGGAAATCATCAACTTCATCTTCTCACAAATGTTGCGGCCGAGAAAATCATCAT
CTTCATCTTCTCATATATGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCATATATGTTGCAGCCAAGAGGATCATCACCATCATGTTCATCTTCTCACATATGTTG
CAGCCGAGAGGATCTTCATCATCATGTTCATCTTCTCACATATGTTGCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGCCAAGAGGATCATCACCATCATGTTCATCTTCTCACATATGTTGCAGCCGAGAGGATCTTCATCATCATGTTCATCTCACATATATTGCAGTCGAGAGGAT
CTTCATCATCATCTTCATCTCACATATGTTGCAGCCGAGAGGATCTTCATCATCATCTTCATCTCACATATGTTGCAGCCGAGAGGATCTTCATCATCATCTTCATCTCA
CATATGTTGCAGCTGAGAGGATCTTCATCATCATCTTCATCTCACATATGTTGCAGCCGAGAGGATCTTCTTCATCATCTTCATCTCACAAATGTTGCAGCCGAGAGGAT
CTTCATCATCATCTTCATCTCACAAATGTTGCAGCCGAGAGGATCTTCAGCATTATGTTCATCTTCTCACATATGTTGCAGCTGGGAGGATCTTCACCACCATCATCATC
TTCAATGTGTTGCAACAGAGAGGATCATCATCTTCATCTTCAATGTGTTGTAGCGGAGGAAATCATCAACTTCATCTTCTCACAAATGTTGCGGCCGAGAAAATCATCAT
CTTCATCTTCTCATATATGTTACAGCCGAGAGGATCATCATCTTCATCTTCTCATATATGTTGCAGCCAAGAGGATCATCACCATCATGTTCATCTTCTCACATATGTTG
CAGCCGAGAGGATCTTCATCATCATGTTCATCTTCTCACATATGTTGCAGCTGA
Protein sequenceShow/hide protein sequence
MLQPRGSSPSCSSSHICCSREDLHHHVHLTYIAVERIFIIIFISHMLQPRGSSSSSSSHICCSREDLHHHLHLTYVAAERIFIIIFISHMLQPRGSSSSSSSHKCCSRED
LHHHLHLTNVAAERIFSIMFIFSHMLQLGGSSPPSSSSMCCNREDHHLHLQCVVAEEIINFIFSQMLRPRKSSSSSSHICYSREDHHLHLLIYVAAKRIITIMFIFSHML
QPRGSSSSCSSSHICCS