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IVF0001730 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001730
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr08:21728572..21728823
RNA-Seq ExpressionIVF0001730
SyntenyIVF0001730
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RRQ65156.1 hypothetical protein CQW39_37580 [Streptomyces griseofuscus]5.25e-3575.9Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRNV+ RP IDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VEDLE W QKI++FKL QL  TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

TYK04336.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. makuwa]2.29e-3778.31Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRN++ RP IDLSQKEDK VE+IL +RV++GRRPTRRIHEYLVKWKNL VEETSWE VEDLE W QKIK+FKLRQL  TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]3.57e-3578.31Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRNV+ RPTIDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VEDLE W QKI++FKLRQL  TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

TYK28810.1 reverse transcriptase [Cucumis melo var. makuwa]2.63e-3577.11Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRN++ RP IDLSQKEDK VE+IL KRV++GRRP RRIHEYLVKWKNL VEETSWE VEDLE W QKI++FKLRQL +TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

WP_148103103.1 hypothetical protein, partial [Streptomyces griseofuscus]5.74e-3575.9Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRNV+ RP IDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VEDLE W QKI++FKL QL  TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

TrEMBL top hitse value%identityAlignment
A0A5A7TR40 Polyprotein1.8e-2777.11Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRN++ RP IDLSQKEDK VE+IL KRV++GRRP RRIHEYLVKWKNL VEETSWE VEDLE W QKI++FKLRQL +TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

A0A5D3C1P4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase1.8e-2778.31Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRN++ RP IDLSQKEDK VE+IL +RV++GRRPTRRIHEYLVKWKNL VEETSWE VEDLE W QKIK+FKLRQL  TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

A0A5D3C4R1 Reverse transcriptase3.1e-2778.31Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRNV+ RPTIDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VEDLE W QKI++FKLRQL  TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

A0A5D3DBE0 Reverse transcriptase3.1e-2778.31Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRNV+ RPTIDLSQKEDK VE+IL +RV++GRRP RRIHEYLVKWKNL VEETSWE VEDLE W QKI++FKLRQL  TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

A0A5D3DZY1 Reverse transcriptase1.8e-2777.11Show/hide
Query:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI
        +QRN++ RP IDLSQKEDK VE+IL KRV++GRRP RRIHEYLVKWKNL VEETSWE VEDLE W QKI++FKLRQL +TSTI
Subjt:  MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCGTAATGTCATAGGTCGACCAACCATCGATCTAAGTCAGAAAGAAGATAAATATGTTGAAAAAATCCTAGTCAAGCGAGTAAAAAAGGGTCGAAGACCCACAAG
AAGGATCCACGAGTACTTGGTAAAGTGGAAGAACCTTCATGTGGAAGAAACTAGTTGGGAACATGTTGAAGACCTAGAAGTCTGGATACAGAAGATCAAAGAGTTCAAAC
TTCGCCAGTTGATAAAGACATCAACTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCGTAATGTCATAGGTCGACCAACCATCGATCTAAGTCAGAAAGAAGATAAATATGTTGAAAAAATCCTAGTCAAGCGAGTAAAAAAGGGTCGAAGACCCACAAG
AAGGATCCACGAGTACTTGGTAAAGTGGAAGAACCTTCATGTGGAAGAAACTAGTTGGGAACATGTTGAAGACCTAGAAGTCTGGATACAGAAGATCAAAGAGTTCAAAC
TTCGCCAGTTGATAAAGACATCAACTATTTAA
Protein sequenceShow/hide protein sequence
MQRNVIGRPTIDLSQKEDKYVEKILVKRVKKGRRPTRRIHEYLVKWKNLHVEETSWEHVEDLEVWIQKIKEFKLRQLIKTSTI