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IVF0001870 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001870
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionglycine-rich RNA-binding protein GRP2A-like
Genome locationchr07:17770766..17771499
RNA-Seq ExpressionIVF0001870
SyntenyIVF0001870
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063029.1 hypothetical protein E6C27_scaffold468G001370 [Cucumis melo var. makuwa]1.30e-123100Show/hide
Query:  MIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPD
        MIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPD
Subjt:  MIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPD

Query:  TQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL
        TQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL
Subjt:  TQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL

KAE8649249.1 hypothetical protein Csa_015081, partial [Cucumis sativus]1.33e-11689.35Show/hide
Query:  MLLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPD
        MLLDLKPSILI IICTSLVVVAAILCCFC+IG GY+KKDA+ LPTPSVSIGRSRPLQTYRD+EFGQGIRTYRQDSTPRSE+SI  DTRGSQR EQSIF D
Subjt:  MLLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPD

Query:  ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGV
        ARGFQTSEQSIFPDTRSSRRNE   ILPDTQ SRRSE+IDRQD TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDG YVDNC DGTDG GV
Subjt:  ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGV

Query:  YGGGGGSNSCGNGSQL
        YGGG GSNS GNGSQL
Subjt:  YGGGGGSNSCGNGSQL

KAG6600486.1 hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sororia]1.82e-2743.44Show/hide
Query:  DLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRP------LQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSI
        D+KPSI+I IIC SL+    ILCC C+I G  K+KD+   PTPS SI   RP       Q+Y DVE GQGIR +RQD T RSEQS+  D  G+QR EQ  
Subjt:  DLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRP------LQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSI

Query:  FPD--ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSS------------YQGGEDI
        F    +R  Q+SE S+  D RS                                 KDGGMAI AGAGAA+A AA  LGLSS            Y G   +
Subjt:  FPD--ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSS------------YQGGEDI

Query:  DGGYVDNCGDGTDGSGVYGGG
          GY D+CG+G    G  GGG
Subjt:  DGGYVDNCGDGTDGSGVYGGG

XP_022942031.1 glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata]5.20e-2743.69Show/hide
Query:  DLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRP-------LQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQS
        D+KPSI+I IIC SL+    ILCC C+I G  K+KD+   PTPS SI   RP        Q+Y DVE GQGIR YRQD T RSEQS+  D  G+QR EQ 
Subjt:  DLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRP-------LQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQS

Query:  IFPD--ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSS------------YQGGED
         F    +R  Q+SE S+  D RS                                 KDGGMAI AGAGAA+A AA  LGLSS            Y G   
Subjt:  IFPD--ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSS------------YQGGED

Query:  IDGGYVDNCGDGTDGSGVYGGG
           GY D+CG+G    G  GGG
Subjt:  IDGGYVDNCGDGTDGSGVYGGG

XP_023543717.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]3.06e-2543.5Show/hide
Query:  DLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRP------LQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSI
        D+KPSI+I IIC SL+    ILCC C+I G  +K      PTPS SI   RP       Q+Y DVE GQGIR YRQD T RSEQS+  D  G+QR E+  
Subjt:  DLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRP------LQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSI

Query:  FPD--ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGT
        F    +R  Q+SE S+  D                               ++S  KDGGMAILAGAGAA+A AA  +GLSS  GG++  G      GDG+
Subjt:  FPD--ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGT

TrEMBL top hitse value%identityAlignment
A0A0A0L0B2 Uncharacterized protein4.6e-9189.35Show/hide
Query:  MLLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPD
        MLLDLKPSILI IICTSLVVVAAILCCFC+IG GY+KKDA+ LPTPSVSIGRSRPLQTYRD+EFGQGIRTYRQDSTPRSE+SI  DTRGSQR EQSIF D
Subjt:  MLLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPD

Query:  ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGV
        ARGFQTSEQSIFPDTRSSRRNE   ILPDTQ SRRSE+IDRQD TRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDG YVDNC DGTDG GV
Subjt:  ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGV

Query:  YGGGGGSNSCGNGSQL
        YGGG GSNS GNGSQL
Subjt:  YGGGGGSNSCGNGSQL

A0A5A7VBP6 Uncharacterized protein8.2e-96100Show/hide
Query:  MIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPD
        MIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPD
Subjt:  MIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPD

Query:  TQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL
        TQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL
Subjt:  TQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL

A0A6J1CLX2 ctenidin-3-like7.6e-0934.09Show/hide
Query:  LKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSR--PLQTY--RDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPD
        +KP   I IIC+S++    ILCC C+I G  KK+     P  S +IG     P QTY   D+E GQG RT RQ                           
Subjt:  LKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSR--PLQTY--RDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPD

Query:  ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDG--TDG-
                                                     R S IKDGGMAILAGAG AIATAA + GLSS    E  +G Y D+CGDG  +DG 
Subjt:  ARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDG--TDG-

Query:  --SGVYGGGGGSNSCGNGSQ
           G  G G G   CG+G +
Subjt:  --SGVYGGGGGSNSCGNGSQ

A0A6J1FMR9 glycine-rich RNA-binding protein GRP2A-like6.0e-2242.67Show/hide
Query:  LLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSR-------PLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDE
        + D+KPSI+I IIC SL+    ILCC C+I  G K+KD+   PTPS SI   R       P Q+Y DVE GQGIR YRQD T RSEQS+  D  G+QR E
Subjt:  LLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSR-------PLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDE

Query:  QSIF--PDARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSS------------YQGG
        Q  F    +R  Q+SE S+  D RS                                 KDGGMAI AGAGAA+A AA  LGLSS            Y G 
Subjt:  QSIF--PDARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSS------------YQGG

Query:  EDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGN
             GY D+CG+G    G  GGG     CG+
Subjt:  EDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATTGGATTTGAAACCTTCCATCCTCATTGCCATAATTTGCACTTCTTTAGTAGTTGTTGCTGCGATTTTATGTTGCTTTTGTATGATTGGAGGTGGTTACAAAAA
GAAAGATGCACATGGATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAACGTACCGGGATGTTGAATTTGGACAAGGTATTCGAACTTATAGACAAG
ACTCGACTCCAAGAAGCGAACAAAGCATTTTTCCTGACACACGAGGTTCTCAAAGAGATGAACAAAGCATTTTTCCTGACGCACGAGGTTTTCAAACAAGTGAACAAAGC
ATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACATCTTCGTATTCTACCGGACACACAAGGTTCTCGAAGAAGTGAACGAATCGACCGACAAGATAATACTCGAGA
GAGCAGAATCAAGGACGGTGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGCAGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGAGGAGAAGATATTG
ATGGTGGCTATGTCGATAATTGTGGCGATGGTACCGATGGCAGTGGCGTCTATGGTGGTGGTGGCGGCAGCAACAGCTGTGGCAATGGCTCTCAACTTTGA
mRNA sequenceShow/hide mRNA sequence
TTTTGGCCAAGAGATATTGTTCATATTATACCGGTAAAGTCCCAATAATGTTATTGGATTTGAAACCTTCCATCCTCATTGCCATAATTTGCACTTCTTTAGTAGTTGTT
GCTGCGATTTTATGTTGCTTTTGTATGATTGGAGGTGGTTACAAAAAGAAAGATGCACATGGATTGCCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTGCAAAC
GTACCGGGATGTTGAATTTGGACAAGGTATTCGAACTTATAGACAAGACTCGACTCCAAGAAGCGAACAAAGCATTTTTCCTGACACACGAGGTTCTCAAAGAGATGAAC
AAAGCATTTTTCCTGACGCACGAGGTTTTCAAACAAGTGAACAAAGCATTTTCCCTGACACACGAAGTTCTCGAAGAAATGAACATCTTCGTATTCTACCGGACACACAA
GGTTCTCGAAGAAGTGAACGAATCGACCGACAAGATAATACTCGAGAGAGCAGAATCAAGGACGGTGGGATGGCCATCTTGGCTGGAGCAGGCGCTGCTATAGCTACTGC
AGCTACTGTTCTTGGTTTAAGTAGTTATCAAGGAGGAGAAGATATTGATGGTGGCTATGTCGATAATTGTGGCGATGGTACCGATGGCAGTGGCGTCTATGGTGGTGGTG
GCGGCAGCAACAGCTGTGGCAATGGCTCTCAACTTTGAGGTTTGATGTAAAGTAAAACAAGGTGTGCAACACCA
Protein sequenceShow/hide protein sequence
MLLDLKPSILIAIICTSLVVVAAILCCFCMIGGGYKKKDAHGLPTPSVSIGRSRPLQTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTRGSQRDEQSIFPDARGFQTSEQS
IFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNTRESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDNCGDGTDGSGVYGGGGGSNSCGNGSQL