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IVF0001876 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001876
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr05:15208164..15208420
RNA-Seq ExpressionIVF0001876
SyntenyIVF0001876
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040427.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.97e-4187.06Show/hide
Query:  MKGRGGATETKRGGVDDDNKVLKWGNN----------TGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
        MKGRGGATETKRGGVDDDNKVLKWGN+          TGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
Subjt:  MKGRGGATETKRGGVDDDNKVLKWGNN----------TGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
TYJ98688.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.97e-4187.06Show/hide
Query:  MKGRGGATETKRGGVDDDNKVLKWGNN----------TGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
        MKGRGGATETKRGGVDDDNKVLKWGN+          TGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
Subjt:  MKGRGGATETKRGGVDDDNKVLKWGNN----------TGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
TrEMBL top hitse value%identityAlignment
A0A5A7TFU1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-3487.06Show/hide
Query:  MKGRGGATETKRGGVDDDNKVLKWGN----------NTGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
        MKGRGGATETKRGGVDDDNKVLKWGN          +TGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
Subjt:  MKGRGGATETKRGGVDDDNKVLKWGN----------NTGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
A0A5D3BKF7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-3487.06Show/hide
Query:  MKGRGGATETKRGGVDDDNKVLKWGN----------NTGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
        MKGRGGATETKRGGVDDDNKVLKWGN          +TGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
Subjt:  MKGRGGATETKRGGVDDDNKVLKWGN----------NTGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGCCGTGGTGGCGCCACTGAAACGAAGAGAGGCGGCGTCGACGACGACAATAAGGTGCTGAAATGGGGAAACAACACGGGTTTAAAGTACGGAAGAGGA
AGAGTAAACCCTAGTGGGGCTTGTGGGAAGTTTGACTTCGGTTGGCGGACTCCTGGCGTTCCTAATAGTTTGCTGAACACAATTTTTTTTGGAACCTTGAGAGAA
CGTTTCGGGCAGGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGCCGTGGTGGCGCCACTGAAACGAAGAGAGGCGGCGTCGACGACGACAATAAGGTGCTGAAATGGGGAAACAACACGGGTTTAAAGTACGGAAGAGGA
AGAGTAAACCCTAGTGGGGCTTGTGGGAAGTTTGACTTCGGTTGGCGGACTCCTGGCGTTCCTAATAGTTTGCTGAACACAATTTTTTTTGGAACCTTGAGAGAA
CGTTTCGGGCAGGGGTAA
Protein sequenceShow/hide protein sequence
MKGRGGATETKRGGVDDDNKVLKWGNNTGLKYGRGRVNPSGACGKFDFGWRTPGVPNSLLNTIFFGTLRERFGQG