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IVF0001910 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001910
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionE3 ubiquitin-protein ligase arkadia-A, putative
Genome locationchr08:901456..902128
RNA-Seq ExpressionIVF0001910
SyntenyIVF0001910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052530.1 putative E3 ubiquitin-protein ligase arkadia-A [Cucumis melo var. makuwa]1.32e-85100Show/hide
Query:  MNLTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWE
        MNLTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWE
Subjt:  MNLTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWE

Query:  RLRIKLAALRSRWCDCFHRIFGFFSFALD
        RLRIKLAALRSRWCDCFHRIFGFFSFALD
Subjt:  RLRIKLAALRSRWCDCFHRIFGFFSFALD

KAG7034735.1 hypothetical protein SDJN02_04465, partial [Cucurbita argyrosperma subsp. argyrosperma]2.18e-6989.17Show/hide
Query:  MEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKL
        M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKL
Subjt:  MEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKL

Query:  AALRSRWCDCFHRIFGFFSF
        AALRSRWCDCF R FGFF F
Subjt:  AALRSRWCDCFHRIFGFFSF

XP_022925985.1 uncharacterized protein LOC111433238 [Cucurbita moschata]6.15e-7186.82Show/hide
Query:  MNLTT---TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNLTT    M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNLTT---TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSF
        FWERLRIKLAALRSRWCDCF R FGFF F
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSF

XP_022977989.1 uncharacterized protein LOC111478115 [Cucurbita maxima]2.61e-7287.69Show/hide
Query:  MNLTT---TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNLTT   TM+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNLTT---TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA
        FWERLRIKLAALRSRWCDCF R FGFF FA
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA

XP_023544918.1 uncharacterized protein LOC111804374 [Cucurbita pepo subsp. pepo]9.29e-7186.92Show/hide
Query:  MNLTT---TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNLTT    M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNLTT---TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA
        FWERLRIKLAALRSRWCDCF R FGFF FA
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA

TrEMBL top hitse value%identityAlignment
A0A0A0KKP9 Uncharacterized protein1.3e-6196.18Show/hide
Query:  MNL--TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
        MNL  TTTMED H+LQNIPSFKLSRYSSSARDSDA DDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF
Subjt:  MNL--TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGF

Query:  WERLRIKLAALRSRWCDCFHRIFGFFSFALD
        WERLRIKLAALRSRWCDCFHRIFGFFSFALD
Subjt:  WERLRIKLAALRSRWCDCFHRIFGFFSFALD

A0A5A7UBK0 Putative E3 ubiquitin-protein ligase arkadia-A9.9e-65100Show/hide
Query:  MNLTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWE
        MNLTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWE
Subjt:  MNLTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWE

Query:  RLRIKLAALRSRWCDCFHRIFGFFSFALD
        RLRIKLAALRSRWCDCFHRIFGFFSFALD
Subjt:  RLRIKLAALRSRWCDCFHRIFGFFSFALD

A0A6J1CYB8 uncharacterized protein LOC1110157121.9e-4491.59Show/hide
Query:  TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIK
        T+ +SHKLQNIPSFKLSRYSS ARDSDAGDDLRY SLKDILLNSPSYSGVNDFN+FNSSNISIRNELVKRAASAYLQSAAILVSRNES FV FWERLR K
Subjt:  TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIK

Query:  LAALRSR
        LAALRSR
Subjt:  LAALRSR

A0A6J1EJR7 uncharacterized protein LOC1114332381.3e-5386.82Show/hide
Query:  MNL---TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNL   TT M+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNL---TTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSF
        FWERLRIKLAALRSRWCDCF R FGFF F
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSF

A0A6J1ISV4 uncharacterized protein LOC1114781151.2e-5487.69Show/hide
Query:  MNLTT---TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG
        MNLTT   TM+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVG
Subjt:  MNLTT---TMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVG

Query:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA
        FWERLRIKLAALRSRWCDCF R FGFF FA
Subjt:  FWERLRIKLAALRSRWCDCFHRIFGFFSFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18395.1 unknown protein3.2e-0735.78Show/hide
Query:  DSDAGDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDC
        D +  ++L+YTSLKD++ +S         P YS  +      +E +SSNI+I NELVKRAAS Y+QS+ I+++ + + F  F   L+ K  A+ +   DC
Subjt:  DSDAGDDLRYTSLKDILLNS---------PSYSGVND----FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDC

Query:  FHRIFGFFS
           +   F+
Subjt:  FHRIFGFFS

AT5G06280.1 unknown protein4.3e-0439.74Show/hide
Query:  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA
        YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ + L+A
Subjt:  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA

AT5G06280.3 unknown protein4.3e-0439.74Show/hide
Query:  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA
        YTSL+DI+       LN PS +G  +      + +ISIRN LVK+AA +YLQ   +L S ++S    F+ R+ + L+A
Subjt:  YTSLKDIL-------LNSPSYSG-VNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTAACAACAACCATGGAAGACTCTCATAAGCTTCAGAACATACCTTCTTTCAAATTGTCCCGTTATTCCTCCAGCGCCCGAGACTCCGATGCCGGGGATGACCT
CCGATACACTAGCTTGAAAGACATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTCAACGAATTCAATTCATCAAATATTTCGATCCGAAACGAGCTGGTGA
AAAGAGCCGCATCAGCGTACCTTCAATCGGCGGCGATTTTGGTAAGCCGGAATGAAAGCGGTTTCGTCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGT
TCCCGCTGGTGTGATTGTTTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCTTAGACTAA
mRNA sequenceShow/hide mRNA sequence
CTCCCACAAAATTCTCTGCTTTTGGCCGCATCTTAATGAATACCGTAAACTCTCAAATCCATCCATAGCCTCAATTGGCCTATTCAATCTCCTAATTCCATGGAATCTTC
AACAAATCCAACCCCTTTTTCTCTCTACACCATTAACAAATTCCATCACAATCTCTTCCCAATAAAGAACAGAACAAAAAAGGAAAACAAAAATTGGGTCAAAAACCTGA
AAATCACCTTTAATGGCTATAATCCACAGTGAAAATCTCCGACTATGAATTTAACAACAACCATGGAAGACTCTCATAAGCTTCAGAACATACCTTCTTTCAAATTGTCC
CGTTATTCCTCCAGCGCCCGAGACTCCGATGCCGGGGATGACCTCCGATACACTAGCTTGAAAGACATTCTTCTGAATTCGCCGTCGTACAGCGGCGTAAATGATTTCAA
CGAATTCAATTCATCAAATATTTCGATCCGAAACGAGCTGGTGAAAAGAGCCGCATCAGCGTACCTTCAATCGGCGGCGATTTTGGTAAGCCGGAATGAAAGCGGTTTCG
TCGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGTTCCCGCTGGTGTGATTGTTTTCACCGTATTTTTGGCTTCTTTAGTTTTGCCTTAGACTAAGAACAT
CGTTAGACCTTCC
Protein sequenceShow/hide protein sequence
MNLTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVNDFNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALR
SRWCDCFHRIFGFFSFALD