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IVF0001943 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0001943
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionC2H2-type domain-containing protein
Genome locationchr01:21653414..21656072
RNA-Seq ExpressionIVF0001943
SyntenyIVF0001943
Gene Ontology termsGO:0010027 - thylakoid membrane organization (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsIPR040003 - Plastoglobular protein 18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]4.09e-7175.28Show/hide
Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG-----------DGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLV TKPKITHYS PSLL FRSSSTPSNL+FRGISHFQPNG           DGDSRT+LDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG-----------DGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
        GIG+LQAEQQKQITDFQ                 +KEVQ PVSSSVISP IEV SSPTSSSPDADSES VNQDP LG+
Subjt:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]1.39e-8584.27Show/hide
Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG-----------DGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG           DGDSRTILDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG-----------DGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
        GIGKLQAEQQKQITDFQ                 AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
Subjt:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

XP_016900330.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X2 [Cucumis melo]4.51e-6189.08Show/hide
Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG-----------DGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG           DGDSRTILDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG-----------DGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQAK
        GIGKLQAEQQKQITDFQ +
Subjt:  GIGKLQAEQQKQITDFQAK

XP_022154385.1 uncharacterized protein At4g13200, chloroplastic [Momordica charantia]4.10e-4857.3Show/hide
Query:  SRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN--------------------GDGDSRTILDAFFLGKALAEALTERIES
        S I +SVS SPFSL+ TKPK TH+SSP+L   RS STPSNL+ RGI HF PN                    GDGDSRT+LDAFFLGKALAEALTERIES
Subjt:  SRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN--------------------GDGDSRTILDAFFLGKALAEALTERIES

Query:  TIGEVLSGIGKLQAEQQKQITDFQAK-----------------EVQRPVSSSVISPTIEVSSSPTS--SSPDADSESGVNQDPPL
        T+GEVLSGIG+LQAE+QKQI DFQ +                 EVQ P+S S+ SPTI V+S+     S PD  SES VN DPPL
Subjt:  TIGEVLSGIGKLQAEQQKQITDFQAK-----------------EVQRPVSSSVISPTIEVSSSPTS--SSPDADSESGVNQDPPL

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]6.07e-6870.81Show/hide
Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG-----------DGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLVPTKPKITHYSS SLL FRSSSTPSNL+FR ISHFQPNG           DGDSRT+LDAFFLGKALAEALTERIEST+GEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNG-----------DGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSS-------PDADSESGVNQDPPLGD
        GIG+LQAEQQKQITDFQ                 AKEVQ PVSSS+ SPTIEV+SSPT S+       PD DSE+ VNQDPPLGD
Subjt:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSS-------PDADSESGVNQDPPLGD

TrEMBL top hitse value%identityAlignment
A0A0A0K6Q2 Uncharacterized protein2.8e-5575.28Show/hide
Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN-----------GDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSS +TSSVS SPFSLV TKPKITHYS PSLL FRSSSTPSNL+FRGISHFQPN           GDGDSRT+LDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN-----------GDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
        GIG+LQAEQQKQITDFQ                 +KEVQ PVSSSVISP IEV SSPTSSSPDADSES VNQDP LG+
Subjt:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X12.7e-6684.27Show/hide
Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN-----------GDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN           GDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN-----------GDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
        GIGKLQAEQQKQITDFQ                 AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD
Subjt:  GIGKLQAEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD

A0A1S4DX82 uncharacterized protein At4g13200, chloroplastic isoform X23.7e-4789.08Show/hide
Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN-----------GDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
        MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN           GDGDSRTILDAFFLGKALAEALTERIESTIGEVLS
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN-----------GDGDSRTILDAFFLGKALAEALTERIESTIGEVLS

Query:  GIGKLQAEQQKQITDFQAK
        GIGKLQAEQQKQITDFQ +
Subjt:  GIGKLQAEQQKQITDFQAK

A0A6J1DJG4 uncharacterized protein At4g13200, chloroplastic7.0e-3857.3Show/hide
Query:  SRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN--------------------GDGDSRTILDAFFLGKALAEALTERIES
        S I +SVS SPFSL+ TKPK TH+SSP+L   RS STPSNL+ RGI HF PN                    GDGDSRT+LDAFFLGKALAEALTERIES
Subjt:  SRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPN--------------------GDGDSRTILDAFFLGKALAEALTERIES

Query:  TIGEVLSGIGKLQAEQQKQITDFQAK-----------------EVQRPVSSSVISPTIEVSSSPTS--SSPDADSESGVNQDPPL
        T+GEVLSGIG+LQAE+QKQI DFQ +                 EVQ P+S S+ SPTI V+S+     S PD  SES VN DPPL
Subjt:  TIGEVLSGIGKLQAEQQKQITDFQAK-----------------EVQRPVSSSVISPTIEVSSSPTS--SSPDADSESGVNQDPPL

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like1.6e-3758.66Show/hide
Query:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQ-----PNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQ
        MSS + SSVS S FS+VPTK KITH SSPSL+ FRSSST SNL+FR     +      +GDGD+RT+LDAFF+GKA AE LTER+EST+GEVL  IG+LQ
Subjt:  MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQ-----PNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQ

Query:  AEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQDPPLGD
        AE+Q+QI DFQ                 AKE Q P+SSS+IS TIEV+SSPT+       SSP+A SE+ VNQDPP GD
Subjt:  AEQQKQITDFQ-----------------AKEVQRPVSSSVISPTIEVSSSPTS-------SSPDADSESGVNQDPPLGD

SwissProt top hitse value%identityAlignment
Q8LDV3 Uncharacterized protein At4g13200, chloroplastic8.1e-1553.85Show/hide
Query:  RSSSTPSNLQFRGISHFQPNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQAKEVQR
        RS+S  SN   +G      +G+ +++++LDAFFLGKALAE + ERIEST+GEVLS IGK QAEQQKQ+ + Q + ++R
Subjt:  RSSSTPSNLQFRGISHFQPNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQAKEVQR

Arabidopsis top hitse value%identityAlignment
AT4G13200.1 unknown protein5.7e-1653.85Show/hide
Query:  RSSSTPSNLQFRGISHFQPNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQAKEVQR
        RS+S  SN   +G      +G+ +++++LDAFFLGKALAE + ERIEST+GEVLS IGK QAEQQKQ+ + Q + ++R
Subjt:  RSSSTPSNLQFRGISHFQPNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQAKEVQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGTAGGATTACGTCTTCTGTTTCCTGGTCTCCCTTTTCGCTTGTACCCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGCTCCTC
TTCAACTCCTTCAAATCTCCAATTTCGTGGAATTTCACATTTTCAACCAAATGGTGATGGTGACAGCAGGACCATTCTAGATGCATTTTTTTTGGGAAAAGCTTTGGCAG
AAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAAGCTGCAAGCTGAACAACAAAAACAAATTACTGATTTCCAGGCCAAAGAAGTA
CAACGACCCGTTTCCTCTTCAGTAATATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTCTTCAAGTCCCGACGCAGATTCAGAAAGTGGTGTGAATCAGGATCCTCC
CCTTGGTGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGTAGGATTACGTCTTCTGTTTCCTGGTCTCCCTTTTCGCTTGTACCCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGCTCCTC
TTCAACTCCTTCAAATCTCCAATTTCGTGGAATTTCACATTTTCAACCAAATGGTGATGGTGACAGCAGGACCATTCTAGATGCATTTTTTTTGGGAAAAGCTTTGGCAG
AAGCCTTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGAGTGGGATTGGTAAGCTGCAAGCTGAACAACAAAAACAAATTACTGATTTCCAGGCCAAAGAAGTA
CAACGACCCGTTTCCTCTTCAGTAATATCGCCTACAATCGAAGTTTCTTCGTCTCCAACTTCTTCAAGTCCCGACGCAGATTCAGAAAGTGGTGTGAATCAGGATCCTCC
CCTTGGTGACTAA
Protein sequenceShow/hide protein sequence
MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQAKEV
QRPVSSSVISPTIEVSSSPTSSSPDADSESGVNQDPPLGD