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IVF0002003 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002003
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionphotosystem II core complex proteins psbY, chloroplastic-like
Genome locationchr10:3646229..3647179
RNA-Seq ExpressionIVF0002003
SyntenyIVF0002003
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0045454 - cell redox homeostasis (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009534 - chloroplast thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030145 - manganese ion binding (molecular function)
InterPro domainsIPR009388 - Photosystem II PsbY
IPR038760 - Photosystem II PsbY, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52335.2 hypothetical protein Csa_009403 [Cucumis sativus]2.12e-10194.44Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRS+
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
XP_004135291.1 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]2.51e-10595Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]1.53e-115100Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
XP_023511769.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo]3.03e-9990.5Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP    P LLPSKPT P+SLP P P K SLAG+AIAGAIFSTLS  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]6.95e-10595Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLP-FPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTP NKTP LLPSKPT+PISLP  P PTKPSLAGTAIAGAIFST SSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLP-FPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEAS+D RGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
TrEMBL top hitse value%identityAlignment
A0A0A0KTG2 Uncharacterized protein1.4e-8095Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTPINKTP LLPSKP TKPISLP PI TKPSLAGTAIAGAIFSTLSSGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKP-TKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIAWVL+NILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like3.0e-88100Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
A0A5A7SY80 Photosystem II core complex proteins psbY3.0e-88100Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like7.8e-7690.5Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like7.8e-7691.11Show/hide
Query:  MAATMATMAILNAKCFTPINKTPV-LLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
        MAATMATMAILNAKCFTP N+TP+ LLPSKPT+PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI
Subjt:  MAATMATMAILNAKCFTPINKTPV-LLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
SwissProt top hitse value%identityAlignment
O49347 Photosystem II core complex proteins psbY, chloroplastic1.7e-4358.64Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKP-ISLPFPIPTKPSLA--GTAIAGAIFSTLSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC +     P L     +KP ISLP P     SLA   TA+AGA+FS+LS  + A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKP-ISLPFPIPTKPSLA--GTAIAGAIFSTLSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGL ASGL+  P      A AA AS+DSRGQLLLIVV PA+ WVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRS
P80470 Photosystem II core complex proteins psbY, chloroplastic1.1e-4760.8Show/hide
Query:  MAATMA-TMAILNAKCFT-PINKTPVLLPSKPTKPISL--------PFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLA----EGDNRGLALLL
        MAATMA TMA+LN KC T   NKT    P   +KPISL          P+   P +   AIAGA+F+TL S D AFA QQ+AD+A      DNRGLALLL
Subjt:  MAATMA-TMAILNAKCFT-PINKTPVLLPSKPTKPISL--------PFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLLASG-LVGTPEAMAAE----ASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQIN+MR E KA IVGLGL GL  SG L+ TPEA AA       +D+RG LLL+VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLLASG-LVGTPEAMAAE----ASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE
Arabidopsis top hitse value%identityAlignment
AT1G67740.1 photosystem II BY1.2e-4458.64Show/hide
Query:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKP-ISLPFPIPTKPSLA--GTAIAGAIFSTLSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC +     P L     +KP ISLP P     SLA   TA+AGA+FS+LS  + A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPINKTPVLLPSKPTKP-ISLPFPIPTKPSLA--GTAIAGAIFSTLSSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGL ASGL+  P      A AA AS+DSRGQLLLIVV PA+ WVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLLASGLVGTP-----EAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCAACAATGGCGACCATGGCTATCCTCAACGCCAAATGCTTCACCCCCATTAATAAAACCCCAGTACTTCTCCCTTCAAAACCCACCAAACCCATCTCCCTCCC
TTTCCCTATCCCAACCAAACCTTCCCTCGCCGGTACCGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTCGCTGCCCAACAGATCGCCGATT
TAGCCGAAGGCGACAACCGGGGACTGGCCCTTTTGCTGCCGCTCATCCCGGCGGTGGCTTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATTAATCGGATG
CGTACGGAGAAGGCGGTGATTGTTGGGTTGGGTCTGGGTGGGTTACTGGCATCGGGGCTGGTGGGGACGCCGGAGGCTATGGCCGCGGAGGCTTCGAACGACTCGCGAGG
ACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTGGGTTTTGTATAATATTTTACAACCGGCGTTGAACCAGCTGAACCGGATGAGATCGGAGTGA
mRNA sequenceShow/hide mRNA sequence
GGCAACAAATTTTTGAGGCTCAAAATTTCCCAATCCCACCCTTTTAGATAAGAATACAATCCATTCTCTCAATTCCATTGGCTCTCATTTCCCCCAAATCCTCTCTCAAA
TTTCCCAAAACCTCTCTTCTTCATCCATCACAACCCTAATTCCTATTCCTTCCACACCAATTTCTTCACTCTCCTTCAATGGCGGCAACAATGGCGACCATGGCTATCCT
CAACGCCAAATGCTTCACCCCCATTAATAAAACCCCAGTACTTCTCCCTTCAAAACCCACCAAACCCATCTCCCTCCCTTTCCCTATCCCAACCAAACCTTCCCTCGCCG
GTACCGCCATCGCCGGAGCAATCTTCTCAACACTGAGCTCCGGAGACGCTGCTTTCGCTGCCCAACAGATCGCCGATTTAGCCGAAGGCGACAACCGGGGACTGGCCCTT
TTGCTGCCGCTCATCCCGGCGGTGGCTTGGGTTCTGTTCAACATTCTTCAGCCGGCGTTGAATCAGATTAATCGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTGGG
TCTGGGTGGGTTACTGGCATCGGGGCTGGTGGGGACGCCGGAGGCTATGGCCGCGGAGGCTTCGAACGACTCGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGA
TTGCTTGGGTTTTGTATAATATTTTACAACCGGCGTTGAACCAGCTGAACCGGATGAGATCGGAGTGAAAATGGTGATTAGCTGATGAACCTTAAATTACTTGTAATTTT
AAATGCAATTTTCTCTTCTGCTTTATAAATGAAGCGTTGGAGTCTTATGCCCAAACTTAAAGATTTTTTTTGGGTCTTTTCTAAGTGTTTATAATCAATCTTCACCAACC
TCAACTTCCAATATACTTTCATTGTGTATTATTATTATTATTATTATTTAAATACCACTTTGTTCATGTTA
Protein sequenceShow/hide protein sequence
MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLSSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRM
RTEKAVIVGLGLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE