CuGenDBv2

Gene ID	IVF0002050
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	sister chromatid cohesion 1 protein 1
Genome location	chr10:16452857..16453608
RNA-Seq Expression	IVF0002050
Synteny	IVF0002050
Gene Ontology terms	GO:0000038 - very long-chain fatty acid metabolic process (biological process) GO:0001676 - long-chain fatty acid metabolic process (biological process) GO:0010032 - meiotic chromosome condensation (biological process) GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase (biological process) GO:0051455 - attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation (biological process) GO:0051754 - meiotic sister chromatid cohesion, centromeric (biological process) GO:0055088 - lipid homeostasis (biological process) GO:0005634 - nucleus (cellular component) GO:0005777 - peroxisome (cellular component) GO:0008278 - cohesin complex (cellular component) GO:0005504 - fatty acid binding (molecular function) GO:0016401 - palmitoyl-CoA oxidase activity (molecular function) GO:0071949 - FAD binding (molecular function)
InterPro domains	IPR039781 - Rad21/Rec8-like protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035874.1 sister chromatid cohesion 1 protein 1 [Cucumis melo var. makuwa]

1.32e-91

100

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Query:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
        MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
Subjt:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS

Query:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
Subjt:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

KGN50276.2 hypothetical protein Csa_005815 [Cucumis sativus]

3.16e-86

95.21

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Query:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
        MEKLMTGQVN GAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDS+RFNKKR YSSSKRSSGGLEPVAEENPWSHHS
Subjt:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS

Query:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        DPNFKLARLSENDPDLLEETALTQTQ++QAA K+PPADKITDSIRM
Subjt:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

TYK30322.1 sister chromatid cohesion 1 protein 1 [Cucumis melo var. makuwa]

1.42e-91

100

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Query:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
        MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
Subjt:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS

Query:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
Subjt:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

XP_008454870.1 PREDICTED: sister chromatid cohesion 1 protein 1 [Cucumis melo]

1.69e-91

100

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Query:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
        MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
Subjt:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS

Query:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
Subjt:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

XP_031742082.1 sister chromatid cohesion 1 protein 1 [Cucumis sativus]

4.00e-86

95.21

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Query:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
        MEKLMTGQVN GAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDS+RFNKKR YSSSKRSSGGLEPVAEENPWSHHS
Subjt:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS

Query:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        DPNFKLARLSENDPDLLEETALTQTQ++QAA K+PPADKITDSIRM
Subjt:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQK0 Uncharacterized protein

3.0e-70

95.21

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Query:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
        MEKLMTGQVN GAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDS+RFNKKR YSSSKRSSGGLEPVAEENPWSHHS
Subjt:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS

Query:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        DPNFKLARLSENDPDLLEETALTQTQ++QAA K+PPADKITDSIRM
Subjt:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

A0A1S3BZ41 sister chromatid cohesion 1 protein 1

2.0e-74

100

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Query:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
        MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
Subjt:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS

Query:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
Subjt:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

A0A5A7SX09 Sister chromatid cohesion 1 protein 1

2.0e-74

100

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Query:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
        MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
Subjt:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS

Query:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
Subjt:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

A0A5D3E364 Sister chromatid cohesion 1 protein 1

2.0e-74

100

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Query:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
        MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS
Subjt:  MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHS

Query:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
Subjt:  DPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

A0A6J1GXZ1 sister chromatid cohesion 1 protein 1-like isoform X1

1.7e-49

76.35

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Query:  MEKLMTGQVNDG--AEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSH
        +EKL T  VND   AEI LEEL P+  +N+M MAERNQ+ TPGNSG GVRSVSSSASEH V   N  T+SVR NKKRPYSSS++SSGGLEPVAEENPW H
Subjt:  MEKLMTGQVNDG--AEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSH

Query:  HSDPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM
        HSDPNFKLARLSENDPDLL ETA TQTQV+Q A KHPPADKIT+SIRM
Subjt:  HSDPNFKLARLSENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGAAGCTAATGACCGGACAAGTCAATGATGGTGCCGAGATTCCTCTGGAAGAACTTGGACCCAATATCATGGATAATGTTATGGAGATGGCTGAAAGAAATCAAAT
GGGTACACCTGGAAATTCCGGATTTGGAGTGAGGTCAGTTTCAAGCTCAGCATCTGAACATGATGTGCTATCAAAAAATTCAGGGACTGATTCTGTACGGTTCAACAAGA
AAAGGCCTTATTCTTCATCTAAGCGAAGTAGCGGAGGCCTCGAACCTGTAGCTGAGGAGAATCCATGGTCTCATCATTCTGATCCAAATTTCAAGTTAGCGAGGTTGTCT
GAAAATGATCCAGATTTATTGGAAGAAACTGCATTGACACAAACTCAAGTTTCTCAAGCTGCTTTCAAGCATCCTCCTGCTGACAAGATAACTGATTCCATTCGAATGTA
A

mRNA sequence

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Protein sequence

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MEKLMTGQVNDGAEIPLEELGPNIMDNVMEMAERNQMGTPGNSGFGVRSVSSSASEHDVLSKNSGTDSVRFNKKRPYSSSKRSSGGLEPVAEENPWSHHSDPNFKLARLS
ENDPDLLEETALTQTQVSQAAFKHPPADKITDSIRM

IVF0002050 (gene) of Melon (IVF77) v1 genome