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IVF0002068 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002068
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr07:5842517..5842941
RNA-Seq ExpressionIVF0002068
SyntenyIVF0002068
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049911.1 retrotransposon protein [Cucumis melo var. makuwa]3.98e-6892.59Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGP CSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPF YYDELTYVFGRDRATGRF ETFADV SNEPGGGYDRFDM DENEEF PVY+QGIDL
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

KAA0057610.1 retrotransposon protein [Cucumis melo var. makuwa]1.46e-6992.59Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGPACSGFGWNDEEKCI+AEKELFDNWVRSHP AKGLLNKPF YYDELTYVFGRDRATGRFAETFADV SNEPGGGYDRFDMGD NE+FLPVY+QGIDL
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

KAA0065477.1 retrotransposon protein [Cucumis melo var. makuwa]3.99e-6989.81Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGPACSGFGWNDEEKCI+AEKELFDNWVRSHP AKGLLNKPF YYDELTYVFGRDRATGRFAETFADV SNEPGGGYDRFDMGD NE+F PVY+QG+D+
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

TYK07652.1 retrotransposon protein [Cucumis melo var. makuwa]3.98e-6892.59Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGP CSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPF YYDELTYVFGRDRATGRF ETFADV SNEPGGGYDRFDM DENEEF PVY+QGIDL
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]4.98e-6889.81Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGPACSGFGWNDEEKCI+AEKELFDNWVRSHP AKGLLNKPF YYDELTYVFGRDRATGRFAETFADV SNEPGGGYDRFDMGD NE+F PVY+QG+D+
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

TrEMBL top hitse value%identityAlignment
A0A5A7TC56 Retrotransposon protein7.3e-5389.81Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGPACSGFGWNDEEKCI+AEKELFDNWVRSHP AKGLLNKPF YYDELTYVFGRDRATGRFAETFADV SNEPGGGYDRFDMGD NE+F PVY+QG+D+
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

A0A5A7U8I3 Retrotransposon protein2.5e-5392.59Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGP CSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPF YYDELTYVFGRDRATGRF ETFADV SNEPGGGYDRFDM DENEEF PVY+QGIDL
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

A0A5A7UR77 Retrotransposon protein6.6e-5492.59Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGPACSGFGWNDEEKCI+AEKELFDNWVRSHP AKGLLNKPF YYDELTYVFGRDRATGRFAETFADV SNEPGGGYDRFDMGD NE+FLPVY+QGIDL
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

A0A5D3C8P0 Retrotransposon protein2.5e-5392.59Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGP CSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPF YYDELTYVFGRDRATGRF ETFADV SNEPGGGYDRFDM DENEEF PVY+QGIDL
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

A0A5D3DBP2 Retrotransposon protein5.0e-5492.59Show/hide
Query:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL
        MRGPACSGFGWNDEEKCI+AEKELFDNWVRSHP AKGLLNKPF YYDELTYVFGRDRATGRFAETFADV SNEPGGGYDRFDMGD NE+FLPVY+QGIDL
Subjt:  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDL

Query:  SQDDVRSS
        SQDDVR+S
Subjt:  SQDDVRSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein5.6e-0525.61Show/hide
Query:  GFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEE
        GF W+   + +I +  L+  ++++HP A+    KP L + +L  ++G   A GR++ +  D+E  +   G      G E+ +
Subjt:  GFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEE

AT2G24960.2 unknown protein5.6e-0525.61Show/hide
Query:  GFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEE
        GF W+   + +I +  L+  ++++HP A+    KP L + +L  ++G   A GR++ +  D+E  +   G      G E+ +
Subjt:  GFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEE

AT4G02210.1 unknown protein1.2e-0422.77Show/hide
Query:  GFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDLSQDDVRS
        GF W++E + + A+  ++ +++++H  A+  + +P  YY +L  + G            + +E NE     D FD   E +EF       + +S ++  S
Subjt:  GFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDLSQDDVRS

Query:  S
        +
Subjt:  S

AT4G02210.2 unknown protein1.2e-0422.77Show/hide
Query:  GFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDLSQDDVRS
        GF W++E + + A+  ++ +++++H  A+  + +P  YY +L  + G            + +E NE     D FD   E +EF       + +S ++  S
Subjt:  GFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDLSQDDVRS

Query:  S
        +
Subjt:  S

AT5G27260.1 unknown protein7.8e-0737.1Show/hide
Query:  SGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFAD
        SGFGW+   K   A  E++ +++++HP  K L    F ++DEL  +FG   ATG+ A    D
Subjt:  SGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGGGGCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTACAGCGAAGGG
ACTCCTGAACAAACCATTCCTGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCGGTCGATTCGCTGAGACATTCGCGGACGTCGAGTCTAACGAGC
CTGGTGGCGGATATGACAGATTTGATATGGGGGATGAAAATGAGGAGTTCCTGCCCGTGTACAACCAGGGGATTGACCTCTCGCAGGACGATGTACGTTCATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGGGGCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTACAGCGAAGGG
ACTCCTGAACAAACCATTCCTGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCGGTCGATTCGCTGAGACATTCGCGGACGTCGAGTCTAACGAGC
CTGGTGGCGGATATGACAGATTTGATATGGGGGATGAAAATGAGGAGTTCCTGCCCGTGTACAACCAGGGGATTGACCTCTCGCAGGACGATGTACGTTCATCCTGA
Protein sequenceShow/hide protein sequence
MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFLYYDELTYVFGRDRATGRFAETFADVESNEPGGGYDRFDMGDENEEFLPVYNQGIDLSQDDVRSS