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IVF0002070 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002070
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDynein light chain
Genome locationchr11:27057601..27060430
RNA-Seq ExpressionIVF0002070
SyntenyIVF0002070
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150499.1 dynein light chain 1, cytoplasmic [Cucumis sativus]3.13e-7696.58Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQG L+VKSVSEDRKPPAVT TGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_008458417.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo]7.98e-79100Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]4.28e-7495.73Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKP AV  TGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023006429.1 dynein light chain 1, cytoplasmic [Cucurbita maxima]5.00e-7394.02Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKP  +  TGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_038906782.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]7.68e-7797.44Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKPPAV  TGKKIVIKSADMFGDVQKEAI+VAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A0A0KCI4 Dynein light chain3.1e-5796.58Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQG L+VKSVSEDRKPPAVT TGKKIVIKSADMFGDVQK+AIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A1S3C7T8 Dynein light chain3.3e-59100Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1EQC6 Dynein light chain4.2e-5492.31Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGN MVK+VSEDRKP AV  TGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1H8A5 Dynein light chain1.3e-5595.73Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKP AV  TGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1L253 Dynein light chain8.4e-5594.02Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAKRSIQGNLMVKSVSEDRKP  +  TGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic1.8e-3070.93Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AID A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic3.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic3.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic3.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic3.1e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKDIA  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein5.5e-1458.49Show/hide
Query:  KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.9e-1141.18Show/hide
Query:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVE--KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM   +Q +A+  A  A +   V   K IA  IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVE--KDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein5.2e-4170.94Show/hide
Query:  KRSIQGNLMVKSVSEDRKP--PAVTAT---GKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        K+S+ G    +++ +DR+   P V A+   GK+ VIKSADM  D+QKEAI++AI+AFEK+SVEKDIAE IKKEFDK+HG TWHCIVGRNFGSYVTHETNH
Subjt:  KRSIQGNLMVKSVSEDRKP--PAVTAT---GKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

AT4G27360.1 Dynein light chain type 1 family protein5.7e-1140Show/hide
Query:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVEK--DIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K V+   DM   ++++A+ +A  A +   V +   IA  IKKEFD+ +G  W CIVG +FGS+VTH +  F++F +    +LLFK
Subjt:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVEK--DIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein4.9e-1544.44Show/hide
Query:  KSVSEDRKPPA--VTATGKKIVIK--SADMFGDVQKEAIDVA---IAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQ
        KSVS   +  A  + A  + + ++  +ADM G +Q  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF +D+
Subjt:  KSVSEDRKPPA--VTATGKKIVIK--SADMFGDVQKEAIDVA---IAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQ

Query:  KAVLLFKS
          VLLFK+
Subjt:  KAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAACGATGCTAAGAGAAGCATTCAAGGGAATCTAATGGTGAAATCTGTGTCGGAAGATCGGAAACCACCGGCTGTGACGGCTACTGGGAAGAAAATTGTTATCAA
GAGTGCTGATATGTTTGGTGATGTGCAGAAAGAGGCTATCGATGTCGCCATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATATAGCAGAGTGTATTAAGAAAGAGT
TTGATAAGAGACATGGACCGACCTGGCACTGCATTGTTGGCCGTAATTTTGGTTCGTACGTGACACACGAGACAAACCACTTTGTTTACTTCTACTTGGATCAGAAAGCA
GTTTTGTTGTTTAAATCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
GCAATAAATTCCAAAAAGAGTTAAAAATCACTTTATCCTCTCAGATTCTGAGAGAACTCACGAGCTTTCCTTACAATTTCCACTCAAATCGATGAACTAATTCCAAATTT
CTCCGAACAACAACAACTACTCGAACAGATTGTTTCCTCATATACCGTCGGTTCCGAACCCGCACCGGAGATCAGCAGAAAGAAAAAAAAAATGAGTAACGATGCTAAGA
GAAGCATTCAAGGGAATCTAATGGTGAAATCTGTGTCGGAAGATCGGAAACCACCGGCTGTGACGGCTACTGGGAAGAAAATTGTTATCAAGAGTGCTGATATGTTTGGT
GATGTGCAGAAAGAGGCTATCGATGTCGCCATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATATAGCAGAGTGTATTAAGAAAGAGTTTGATAAGAGACATGGACC
GACCTGGCACTGCATTGTTGGCCGTAATTTTGGTTCGTACGTGACACACGAGACAAACCACTTTGTTTACTTCTACTTGGATCAGAAAGCAGTTTTGTTGTTTAAATCTG
GTTGATAAACATGTATATTATGCAGATTAATGAATCTTATTAACTGATTTATGATCATCGCAGTTTAATCAAATGATGATATCCTTTGTGGACAAGACAGCCTTCCCTTT
TTCCACATCTCTTTTTTCTCGTATCTAATGATTTTGCTTAGGACACTTCAGCCTTTATATTAGACATAATCAGCTTTGTTCACACGCATTCTGTTCAAAAGTAGTTTTCA
TTTTCCTC
Protein sequenceShow/hide protein sequence
MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA
VLLFKSG