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IVF0002110 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002110
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr03:8287441..8287770
RNA-Seq ExpressionIVF0002110
SyntenyIVF0002110
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037866.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.24e-2355.36Show/hide
Query:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGSY-----------------QRLHTCMVTGVVRYLSNQMSNSNKRIRRKHNNKEFR
        MM P FGT YYDLGVGQSS F   YYNSEAGPSS++FGQQYYDLGS                  + L+  + T V +    Q     + IRRK+NNKEFR
Subjt:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGSY-----------------QRLHTCMVTGVVRYLSNQMSNSNKRIRRKHNNKEFR

Query:  VDDDNQLEVVDV
        VDDDNQLE+VDV
Subjt:  VDDDNQLEVVDV

KAA0038072.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]8.11e-2862.37Show/hide
Query:  YYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGSYQRLHTCMVTGVV--------------RYLSNQMSNSNKRIRRKHNNKEFRVDDDN
        YYDLGVGQSS F T YYNS+AG SSSNFGQ+YYDL     LHTC+VTG V              +Y  NQMSN+NKRIRR +NNKE R DDDN
Subjt:  YYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGSYQRLHTCMVTGVV--------------RYLSNQMSNSNKRIRRKHNNKEFRVDDDN

KAA0050408.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.15e-1584.78Show/hide
Query:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGS
        MM  AFGT YYDLGVGQSS F T YYNSEA PSSSNFGQQYYDLGS
Subjt:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGS

KAA0062959.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]2.72e-1582.61Show/hide
Query:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGS
        MM  AFGT YYD  VGQSS FRTRYYNSEAGPSSSNF QQYYDL S
Subjt:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGS

TYK09816.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]3.52e-2455.36Show/hide
Query:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGSY-----------------QRLHTCMVTGVVRYLSNQMSNSNKRIRRKHNNKEFR
        MM P FGT YYDLGVGQSS F   YYNSEAGPSS++FGQQYYDLGS                  + L+  + T V +    Q     + IRRK+NNKEFR
Subjt:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGSY-----------------QRLHTCMVTGVVRYLSNQMSNSNKRIRRKHNNKEFR

Query:  VDDDNQLEVVDV
        VDDDNQLE+VDV
Subjt:  VDDDNQLEVVDV

TrEMBL top hitse value%identityAlignment
A0A5A7T3K7 Mediator of RNA polymerase II transcription subunit 12-like isoform X18.5e-2162.37Show/hide
Query:  YYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGSYQRLHTCMVTGVV--------------RYLSNQMSNSNKRIRRKHNNKEFRVDDDN
        YYDLGVGQSS F T YYNS+AG SSSNFGQ+YYDL     LHTC+VTG V              +Y  NQMSN+NKRIRR +NNKE R DDDN
Subjt:  YYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGSYQRLHTCMVTGVV--------------RYLSNQMSNSNKRIRRKHNNKEFRVDDDN

A0A5A7T6Q6 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.1e-1956.88Show/hide
Query:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLG-----SYQRLHTCMVTGVVRYLSNQM---------SNSNKRIRRKHNNKEFRVDD
        MM P FGT YYDLGVGQSS F   YYNSEAGPSS++FGQQYYDLG     SY   H         YL  ++             + IRRK+NNKEFRVDD
Subjt:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLG-----SYQRLHTCMVTGVVRYLSNQM---------SNSNKRIRRKHNNKEFRVDD

Query:  DNQLEVVDV
        DNQLE+VDV
Subjt:  DNQLEVVDV

A0A5A7U558 Mediator of RNA polymerase II transcription subunit 12-like isoform X14.2e-1284.78Show/hide
Query:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGS
        MM  AFGT YYDLGVGQSS F T YYNSEA PSSSNFGQQYYDLGS
Subjt:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGS

A0A5D3BX46 GATA zinc finger domain-containing protein 10-like isoform X21.2e-1178.26Show/hide
Query:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGS
        +M P FGTIYYD GVGQSS F  RYYNSE GPSS++FGQQYYDLGS
Subjt:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGS

A0A5D3CHF6 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.1e-1956.88Show/hide
Query:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLG-----SYQRLHTCMVTGVVRYLSNQM---------SNSNKRIRRKHNNKEFRVDD
        MM P FGT YYDLGVGQSS F   YYNSEAGPSS++FGQQYYDLG     SY   H         YL  ++             + IRRK+NNKEFRVDD
Subjt:  MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLG-----SYQRLHTCMVTGVVRYLSNQM---------SNSNKRIRRKHNNKEFRVDD

Query:  DNQLEVVDV
        DNQLE+VDV
Subjt:  DNQLEVVDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGCCAGCATTTGGAACGATATATTATGATTTAGGAGTCGGTCAATCATCAATCTTTAGAACAAGATATTACAATTCAGAGGCAGGTCCATCATCATCAAACTT
TGGGCAACAATACTATGATTTAGGAAGTTATCAGCGTCTTCATACATGCATGGTCACGGGCGTGGTTCGGTACCTGAGCAATCAGATGAGCAATAGCAACAAAAGAATCA
GGAGAAAACACAACAACAAAGAGTTTAGAGTCGACGACGATAACCAGCTAGAAGTCGTCGACGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGCCAGCATTTGGAACGATATATTATGATTTAGGAGTCGGTCAATCATCAATCTTTAGAACAAGATATTACAATTCAGAGGCAGGTCCATCATCATCAAACTT
TGGGCAACAATACTATGATTTAGGAAGTTATCAGCGTCTTCATACATGCATGGTCACGGGCGTGGTTCGGTACCTGAGCAATCAGATGAGCAATAGCAACAAAAGAATCA
GGAGAAAACACAACAACAAAGAGTTTAGAGTCGACGACGATAACCAGCTAGAAGTCGTCGACGTCTAG
Protein sequenceShow/hide protein sequence
MMKPAFGTIYYDLGVGQSSIFRTRYYNSEAGPSSSNFGQQYYDLGSYQRLHTCMVTGVVRYLSNQMSNSNKRIRRKHNNKEFRVDDDNQLEVVDV