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IVF0002136 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002136
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein
Genome locationchr06:16920157..16920489
RNA-Seq ExpressionIVF0002136
SyntenyIVF0002136
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026187.1 Gag-pro-like protein [Cucumis melo var. makuwa]1.24e-5184.16Show/hide
Query:  PMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTFT
        PMSYT+LLPQLLK+ QV IVPQEPLQPPYPKWYDPNVKCEYHAG V H TEN FPLKAKVQSLVK   LKFKKT EESDV+ NPLPNHEG AIN+VDTFT
Subjt:  PMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTFT

Query:  E
        E
Subjt:  E

KAA0047385.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]1.32e-5485.15Show/hide
Query:  PMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTFT
        PMSYT+LLP+LLK+ QVAIVPQEPLQPPYPKWYDPNVKCEYH G V H TEN FPLKAKVQSLVK   LKFKKTEEESDVN NPLPNHEG AIN+VDTFT
Subjt:  PMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTFT

Query:  E
        E
Subjt:  E

KAA0055146.1 uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa]1.81e-5188.12Show/hide
Query:  PMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTFT
        PMSYTELLPQLLK+ QVAIVPQEPLQPPYPKWYDPNVKCEYHAG V HSTEN FPLKAKVQSLVK   LKFKK EEESDVN NPLPNHEG AIN+VDTFT
Subjt:  PMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTFT

Query:  E
        E
Subjt:  E

KAA0059164.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]3.60e-5182Show/hide
Query:  MSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTFTE
        MSYT+L PQLLK+ QVAIVPQEPLQPPYPKWY+PN KCEYHAGA+ HST N FPLKAKVQSLVK   LKFKKT EE DVN NPLPNHEG AINVVDTFT+
Subjt:  MSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTFTE

KAA0060507.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]4.40e-75100Show/hide
Query:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF
        MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF
Subjt:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF

Query:  TEDTRIRCVM
        TEDTRIRCVM
Subjt:  TEDTRIRCVM

TrEMBL top hitse value%identityAlignment
A0A5A7TP68 Retrotrans_gag domain-containing protein1.7e-4183.33Show/hide
Query:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF
        +PMSYTELLPQLLK+ QVAIVPQEPLQPPYPKWYDPN KCEYHAGAV HS EN+FPLKAKVQSLVK   LKFKKT EE DVN NPLPNHEG AIN +DTF
Subjt:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF

Query:  TE
        T+
Subjt:  TE

A0A5A7ULI2 Retrotrans_gag domain-containing protein4.1e-4387.25Show/hide
Query:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF
        +PMSYTELLPQLLK+ QVAIVPQEPLQPPYPKWYDPNVKCEYHAG V HSTEN FPLKAKVQSLVK   LKFKK EEESDVN NPLPNHEG AIN+VDTF
Subjt:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF

Query:  TE
        TE
Subjt:  TE

A0A5A7V126 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein1.1e-56100Show/hide
Query:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF
        MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF
Subjt:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF

Query:  TEDTRIRCVM
        TEDTRIRCVM
Subjt:  TEDTRIRCVM

A0A5D3CRP8 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein1.0e-4184.31Show/hide
Query:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF
        +PMSYT+LLP+LLK+ QVAIVPQEPLQPPYPKWYDPNVKCEYH G V H TEN FPLKAKVQSLVK   LKFKKTEEESDVN NPLPNHEG AIN+VDTF
Subjt:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF

Query:  TE
        TE
Subjt:  TE

A0A5D3E5A0 Gag-pro-like protein8.5e-4183.33Show/hide
Query:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF
        +PMSYT+LLPQLLK+ QV IVPQEPLQPPYPKWYDPNVKCEYHAG V H TEN FPLKAKVQSLVK   LKFKKT EESDV+ NPLPNHEG AIN+VDTF
Subjt:  MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTF

Query:  TE
        TE
Subjt:  TE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATGTCGTATACAGAGCTTTTGCCTCAACTTTTAAAGAATCAACAAGTGGCTATCGTACCACAAGAGCCTTTGCAACCACCATATCCTAAGTGGTATGATCCCAA
CGTAAAATGTGAATATCATGCTGGGGCAGTTAGGCATTCTACAGAGAATTATTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGTCAGACGGTTGAAATTCAAAA
AGACAGAAGAAGAGTCTGACGTTAACCATAACCCTTTACCAAATCATGAGGGTTCCGCCATAAATGTTGTTGACACATTCACGGAAGATACAAGAATAAGGTGTGTGATG
TGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATGTCGTATACAGAGCTTTTGCCTCAACTTTTAAAGAATCAACAAGTGGCTATCGTACCACAAGAGCCTTTGCAACCACCATATCCTAAGTGGTATGATCCCAA
CGTAAAATGTGAATATCATGCTGGGGCAGTTAGGCATTCTACAGAGAATTATTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTCAAGGTCAGACGGTTGAAATTCAAAA
AGACAGAAGAAGAGTCTGACGTTAACCATAACCCTTTACCAAATCATGAGGGTTCCGCCATAAATGTTGTTGACACATTCACGGAAGATACAAGAATAAGGTGTGTGATG
TGA
Protein sequenceShow/hide protein sequence
MPMSYTELLPQLLKNQQVAIVPQEPLQPPYPKWYDPNVKCEYHAGAVRHSTENYFPLKAKVQSLVKVRRLKFKKTEEESDVNHNPLPNHEGSAINVVDTFTEDTRIRCVM