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IVF0002177 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002177
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr09:16712938..16713181
RNA-Seq ExpressionIVF0002177
SyntenyIVF0002177
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050216.1 retrotransposon protein [Cucumis melo var. makuwa]1.92e-1997.73Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
        MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAI+
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
KAA0051580.1 retrotransposon protein [Cucumis melo var. makuwa]3.25e-1893.18Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
        MSPDDLM TRTARVSERRNV SGSKRKRPGHATDSGDIVRTAI+
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
KAA0063125.1 retrotransposon protein [Cucumis melo var. makuwa]3.25e-1893.18Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
        MSPDDLM TRTARVSERRNV SGSKRKRPGHATDSGDIVRTAI+
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
KAA0065970.1 retrotransposon protein [Cucumis melo var. makuwa]1.48e-2373.91Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS
        MSP++LMGTRT RVSE R VLSGSK+KR G   DSGD++RTAI+     VKTQAKHVKRLFDSWRPSLS
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS
TYK30259.1 retrotransposon protein [Cucumis melo var. makuwa]1.29e-2273.91Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS
        MSP++LMGTRT RVSE R VLSGSK+KR G   DSGD++RTAI+     VKTQAKHVKRLFDSWRPSLS
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS
TrEMBL top hitse value%identityAlignment
A0A5A7TXK4 Retrotransposon protein3.6e-1393.18Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
        MSPDDLM TRTA+VSERRNVLSGSKRKRPGHATDSGDIVRTAI+
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
A0A5A7U7R0 Retrotransposon protein1.9e-1497.73Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
        MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAI+
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
A0A5A7UME4 Retrotransposon protein8.0e-1393.18Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
        MSPDDLM TRTARVSERRNV SGSKRKRPGHATDSGDIVRTAI+
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAID
A0A5A7VFI4 Retrotransposon protein1.1e-1773.91Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS
        MSP++LMGTRT RVSE R VLSGSK+KR G   DSGD++RTAI+     VKTQAKHVKRLFDSWRPSLS
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS
A0A5D3E392 Retrotransposon protein1.1e-1773.91Show/hide
Query:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS
        MSP++LMGTRT RVSE R VLSGSK+KR G   DSGD++RTAI+     VKTQAKHVKRLFDSWRPSLS
Subjt:  MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCTGATGATTTGATGGGAACAAGAACCGCTAGGGTCAGTGAACGTAGGAATGTTTTAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGA
CATAGTTCGTACTGCCATTGATGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCCTGATGATTTGATGGGAACAAGAACCGCTAGGGTCAGTGAACGTAGGAATGTTTTAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGA
CATAGTTCGTACTGCCATTGATGGCCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTGA
Protein sequenceShow/hide protein sequence
MSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIDGLSYNVKTQAKHVKRLFDSWRPSLS