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IVF0002179 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002179
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:13763647..13764375
RNA-Seq ExpressionIVF0002179
SyntenyIVF0002179
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038094.1 retrotransposon protein [Cucumis melo var. makuwa]1.43e-127100Show/hide
Query:  EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM
        EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM
Subjt:  EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM

Query:  SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP
        SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP
Subjt:  SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP

KAA0057610.1 retrotransposon protein [Cucumis melo var. makuwa]3.75e-9567.62Show/hide
Query:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD
        MAEKLPG +V ATTVID +IKTLK+TF  IAEM+GP CSGF WND+EKC +A+KE+FDN VRSHPA K L NK FPYYDEL YVF  D+ TGRF +TF D
Subjt:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD

Query:  VGSNEPTE-YKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ
        VGSNEP   Y  FDM DGNE+FL +Y+QG D+SQ DVRA RP+R S+GR G S SKRKRGSQR+ ELE I++ L+ TN+QLR IAEWPA  LAND HV  
Subjt:  VGSNEPTE-YKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ

Query:  EFLHLLHEIP
        EF H+L E+P
Subjt:  EFLHLLHEIP

KAA0062588.1 retrotransposon protein [Cucumis melo var. makuwa]2.64e-9467.62Show/hide
Query:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD
        MAEKLPG +V ATTVID +IKTLK+TF  IAEM+GP CSGF WND+EKC +A+KE+FDN VRSHPA K L NK FPYYDEL YVF  D+ TGRF +TF D
Subjt:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD

Query:  VGSNEPTE-YKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ
        VGSNEP   Y  FDM DGNE+F S+Y+QG D+SQ DVRA RP+R S+GR G SRSKRKRGSQR+ ELE I++ L+ TN+QLR IAEWPA  LAND HV  
Subjt:  VGSNEPTE-YKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ

Query:  EFLHLLHEIP
        EF  +L E+P
Subjt:  EFLHLLHEIP

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]7.39e-9366.67Show/hide
Query:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD
        MAEKLPG +V ATTVID +IKTLK+TF  IAEM+GP CSGF WND+EKC +A+KE+FDN VRSHPA K L NK FPYYDEL YVF  D+ TGRF +TF D
Subjt:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD

Query:  VGSNEPTE-YKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ
        VGSNEP   Y  FDM DGNE+F  +Y+QG D+SQ DVRA RP+R S+GR G S SKRKRGSQR+ ELE I++ L+ TN+QLR IAEWPA  LAND HV  
Subjt:  VGSNEPTE-YKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ

Query:  EFLHLLHEIP
        EF  +L E+P
Subjt:  EFLHLLHEIP

TYK20513.1 retrotransposon protein [Cucumis melo var. makuwa]8.27e-12799.44Show/hide
Query:  EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM
        EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM
Subjt:  EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM

Query:  SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP
        SQKDVRALRPA TSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP
Subjt:  SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP

TrEMBL top hitse value%identityAlignment
A0A5A7T3Q2 Retrotransposon protein2.0e-99100Show/hide
Query:  EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM
        EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM
Subjt:  EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM

Query:  SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP
        SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP
Subjt:  SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP

A0A5A7UR77 Retrotransposon protein2.0e-7567.62Show/hide
Query:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD
        MAEKLPG +V ATTVID +IKTLK+TF  IAEM+GP CSGF WND+EKC +A+KE+FDN VRSHPA K L NK FPYYDEL YVF  D+ TGRF +TF D
Subjt:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD

Query:  VGSNEP-TEYKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ
        VGSNEP   Y  FDM DGNE+FL +Y+QG D+SQ DVRA RP+R S+GR G S SKRKRGSQR+ ELE I++ L+ TN+QLR IAEWPA  LAND HV  
Subjt:  VGSNEP-TEYKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ

Query:  EFLHLLHEIP
        EF H+L E+P
Subjt:  EFLHLLHEIP

A0A5A7V4T0 Retrotransposon protein4.5e-7567.62Show/hide
Query:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD
        MAEKLPG +V ATTVID +IKTLK+TF  IAEM+GP CSGF WND+EKC +A+KE+FDN VRSHPA K L NK FPYYDEL YVF  D+ TGRF +TF D
Subjt:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD

Query:  VGSNEP-TEYKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ
        VGSNEP   Y  FDM DGNE+F S+Y+QG D+SQ DVRA RP+R S+GR G SRSKRKRGSQR+ ELE I++ L+ TN+QLR IAEWPA  LAND HV  
Subjt:  VGSNEP-TEYKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ

Query:  EFLHLLHEIP
        EF  +L E+P
Subjt:  EFLHLLHEIP

A0A5D3DAC5 Retrotransposon protein7.6e-9999.44Show/hide
Query:  EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM
        EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM
Subjt:  EMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNEEFLSLYNQGTDM

Query:  SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP
        SQKDVRALRPA TSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP
Subjt:  SQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP

A0A5D3DBP2 Retrotransposon protein1.7e-7467.14Show/hide
Query:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD
        MAEKLPG +V ATTVID +IKTLK+TF  IAEM+GP CSGF WND+EKC +A+KE+FDN VRSHPA K L NK F YYDEL YVF  D+ TGRF +TF D
Subjt:  MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVD

Query:  VGSNEP-TEYKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ
        VGSNEP   Y  FDM DGNE+FL +Y+QG D+SQ DVRA RP+R S+GR G S SKRKRGSQR+ ELE I++ L+ TN+QLR IAEWPA  LAND HV  
Subjt:  VGSNEP-TEYKGFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQ

Query:  EFLHLLHEIP
        EF H+L E+P
Subjt:  EFLHLLHEIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAAAAATTACCTGGCTTTCGTGTCCACGCAACCACTGTAATCGATCATAAAATAAAAACGCTTAAGCAGACATTCCACGTCATCGCAGAAATGCAGGGGCCAAC
GTGTAGTGGGTTCGACTGGAACGATGACGAAAAATGCACAATTGCAAAGAAGGAAGTCTTCGATAACTGTGTTAGGTCGCATCCTGCAACGAAGAGACTCTTTAACAAAC
TCTTTCCCTATTACGACGAACTTGCATATGTGTTCGATCACGATAAGACAACGGGTCGCTTCGTTAAGACATTCGTGGACGTCGGGTCTAACGAACCTACTGAGTATAAG
GGATTTGACATGTCAGATGGGAACGAGGAGTTCCTATCCTTGTACAACCAGGGAACTGACATGTCCCAGAAGGATGTACGCGCATTACGACCTGCTCGCACGTCAGACGG
TAGGGTCGGATTGAGCAGATCGAAGAGAAAGAGGGGAAGCCAGCGGGAGAGTGAGCTTGAAGTCATAAATATGGTCCTCGAGTGTACGAATGACCAACTCAGGATGATTG
CCGAGTGGCCTGCATACGCCCTTGCCAATGACACCCATGTGCACCAGGAATTCTTACATCTATTGCATGAGATACCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAAAAATTACCTGGCTTTCGTGTCCACGCAACCACTGTAATCGATCATAAAATAAAAACGCTTAAGCAGACATTCCACGTCATCGCAGAAATGCAGGGGCCAAC
GTGTAGTGGGTTCGACTGGAACGATGACGAAAAATGCACAATTGCAAAGAAGGAAGTCTTCGATAACTGTGTTAGGTCGCATCCTGCAACGAAGAGACTCTTTAACAAAC
TCTTTCCCTATTACGACGAACTTGCATATGTGTTCGATCACGATAAGACAACGGGTCGCTTCGTTAAGACATTCGTGGACGTCGGGTCTAACGAACCTACTGAGTATAAG
GGATTTGACATGTCAGATGGGAACGAGGAGTTCCTATCCTTGTACAACCAGGGAACTGACATGTCCCAGAAGGATGTACGCGCATTACGACCTGCTCGCACGTCAGACGG
TAGGGTCGGATTGAGCAGATCGAAGAGAAAGAGGGGAAGCCAGCGGGAGAGTGAGCTTGAAGTCATAAATATGGTCCTCGAGTGTACGAATGACCAACTCAGGATGATTG
CCGAGTGGCCTGCATACGCCCTTGCCAATGACACCCATGTGCACCAGGAATTCTTACATCTATTGCATGAGATACCGTAA
Protein sequenceShow/hide protein sequence
MAEKLPGFRVHATTVIDHKIKTLKQTFHVIAEMQGPTCSGFDWNDDEKCTIAKKEVFDNCVRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYK
GFDMSDGNEEFLSLYNQGTDMSQKDVRALRPARTSDGRVGLSRSKRKRGSQRESELEVINMVLECTNDQLRMIAEWPAYALANDTHVHQEFLHLLHEIP