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IVF0002213 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002213
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Genome locationchr04:4400927..4401346
RNA-Seq ExpressionIVF0002213
SyntenyIVF0002213
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025734.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.53e-7482.01Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        M+IIREGPSASRPPVLDGKNYSYWKPRMIF IKTLD KAW+ LV+GYEPPMVT+D V V KPE DWTD EEQAS GNARA+NAIFNG+DLNVFKLINS +
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        T KEA +ILEVAYE TSKVKIS LQLIT KFE LKM+ED
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

KAA0035513.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.90e-7584.17Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        M+IIREGPSASRPPVLDGKNYSYWKPRMIFFIKTL  KAW+ LV+GYEPPMVTVD V VPKPE DWT A+EQAS GNARA+NAIFNG+DLNVFKLINS +
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        TAKEA +ILEVAYE TSKVKIS+LQLIT KFEALKM+ED
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

KAA0038419.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.32e-7584.89Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        M+IIREGPSASRPPV DGKNY YWKPRMIFF+KTLDEKAW+VLV+GYEPPMVTVD V VPKP+ DWTDAEEQAS GNARA+NAIFNG+DLNVFKLINS +
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        TAKEA +ILEVAYE TSKVKISRLQLIT KFEAL+M+ED
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

KAA0063201.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.39e-95100Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

TYK07991.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.32e-7484.17Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        M+IIREG S S PPVLDGKNYSYWKPRMI FIKTLD KAW+ LV+GYEPPM+TVD V VPKPE DWTDAEEQAS GNARALNAIFNG+DLNVFK IN  S
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        T KEA RILEVAYEETSKVKISRLQLIT KFEALKMS+D
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

TrEMBL top hitse value%identityAlignment
A0A5A7SY66 Gag-pol polyprotein4.3e-5884.17Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        M+IIREGPSASRPPVLDGKNYSYWKPRMIFFIKTL  KAW+ LV+GYEPPMVTVD V VPKPE DWT A+EQAS GNARA+NAIFNG+DLNVFKLINS +
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        TAKEA +ILEVAYE TSKVKIS+LQLIT KFEALKM+ED
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

A0A5A7TAN7 Gag-pol polyprotein6.1e-6084.89Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        M+IIREGPSASRPPV DGKNY YWKPRMIFF+KTLDEKAW+VLV+GYEPPMVTVD V VPKP+ DWTDAEEQAS GNARA+NAIFNG+DLNVFKLINS +
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        TAKEA +ILEVAYE TSKVKISRLQLIT KFEAL+M+ED
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

A0A5A7VBW5 Gag-pol polyprotein5.3e-72100Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

A0A5D3BBI3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-5884.17Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        M+IIREGPSAS PPVLDGKNYSYWKP MIFFIKTLD KAW+VLV GYEPPMVTV+ V VPKPE DWTDAEEQAS GNARA+NAIF G+DLNVFKLINS +
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        TAKEA +IL+VAYE TSKVKISRLQLIT KFEALKM+ED
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

A0A5D3BCD8 Gag-pol polyprotein1.5e-5884.17Show/hide
Query:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS
        M+IIREGPSASRPPV DGKNY YWKPRMIF IKTLDEKAW+VLV+GYEPPMVTVD V VPKP+ DWTDAEEQAS GNARA+NAIFNG+DLNVFKLINS +
Subjt:  MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYS

Query:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED
        TAKEA +ILEVAYE TSKVKISRLQLIT KFEAL+M++D
Subjt:  TAKEACRILEVAYEETSKVKISRLQLITLKFEALKMSED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATAATCAGGGAGGGGCCATCAGCTTCTCGTCCTCCTGTACTGGATGGAAAAAATTACTCATACTGGAAGCCTCGTATGATATTCTTCATTAAAACTTTAGATGA
AAAAGCATGGAAAGTCCTTGTTTCTGGTTATGAACCTCCAATGGTTACTGTGGATAGTGTACTAGTTCCAAAACCTGAGTTTGACTGGACAGATGCTGAAGAACAAGCAT
CAGATGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTCTGGATCTAAATGTGTTCAAACTTATAAACTCCTACAGTACAGCTAAAGAAGCGTGTAGAATTTTAGAA
GTTGCTTATGAAGAGACTTCTAAAGTCAAGATATCTAGACTGCAGTTGATAACATTGAAATTTGAAGCTTTGAAAATGTCTGAAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATAATCAGGGAGGGGCCATCAGCTTCTCGTCCTCCTGTACTGGATGGAAAAAATTACTCATACTGGAAGCCTCGTATGATATTCTTCATTAAAACTTTAGATGA
AAAAGCATGGAAAGTCCTTGTTTCTGGTTATGAACCTCCAATGGTTACTGTGGATAGTGTACTAGTTCCAAAACCTGAGTTTGACTGGACAGATGCTGAAGAACAAGCAT
CAGATGGGAATGCTAGAGCTCTAAATGCAATATTCAATGGTCTGGATCTAAATGTGTTCAAACTTATAAACTCCTACAGTACAGCTAAAGAAGCGTGTAGAATTTTAGAA
GTTGCTTATGAAGAGACTTCTAAAGTCAAGATATCTAGACTGCAGTTGATAACATTGAAATTTGAAGCTTTGAAAATGTCTGAAGATTAA
Protein sequenceShow/hide protein sequence
MKIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDEKAWKVLVSGYEPPMVTVDSVLVPKPEFDWTDAEEQASDGNARALNAIFNGLDLNVFKLINSYSTAKEACRILE
VAYEETSKVKISRLQLITLKFEALKMSED