; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0002216 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002216
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionMediator of RNA polymerase II transcription subunit 6
Genome locationchr04:15322083..15325698
RNA-Seq ExpressionIVF0002216
SyntenyIVF0002216
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0070847 - core mediator complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR007018 - Mediator complex, subunit Med6
IPR038566 - Mediator complex, subunit Med6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149176.2 mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus]4.81e-16593.73Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM
        MATPPPPT APPGTGNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP     +   + IEYMLNEVM
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGYAPA TA+TEKGPENQQGESQQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

XP_008447572.1 PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo]1.03e-17095.69Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM
        MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP     +   + IEYMLNEVM
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

XP_008447573.1 PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X2 [Cucumis melo]1.19e-15590.84Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPSIFLNSRIEYMLNEVMEPHL
        MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP                   L
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPSIFLNSRIEYMLNEVMEPHL

Query:  FVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKL
            KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKL
Subjt:  FVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKL

Query:  PPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        PPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
Subjt:  PPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

XP_022148297.1 mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]2.19e-15890.59Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM
        MATPPPP  APPG  NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP     +   +  EYMLNEVM
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGY PAPTA+ EKGPENQ  E QQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

XP_038896808.1 mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]8.35e-16392.55Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM
        MATPPPPT APPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP     +   + IEYMLNEVM
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENE EEVKPAKETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGYAPAPTA+TEKGPEN  GESQQP ADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

TrEMBL top hitse value%identityAlignment
A0A0A0L8C2 Mediator of RNA polymerase II transcription subunit 61.3e-12993.73Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM
        MATPPPP TAPPGTGNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP     +   + IEYMLNEVM
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGYAPA TA+TEKGPENQQGESQQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

A0A1S3BHQ9 Mediator of RNA polymerase II transcription subunit 63.5e-12290.84Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPSIFLNSRIEYMLNEVMEPHL
        MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP                   L
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPSIFLNSRIEYMLNEVMEPHL

Query:  FVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKL
            KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKL
Subjt:  FVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKL

Query:  PPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        PPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
Subjt:  PPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

A0A1S3BHR9 Mediator of RNA polymerase II transcription subunit 68.8e-13495.69Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM
        MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP     +   + IEYMLNEVM
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

A0A5D3CDR8 Mediator of RNA polymerase II transcription subunit 68.8e-13495.69Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM
        MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP     +   + IEYMLNEVM
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

A0A6J1D4P7 Mediator of RNA polymerase II transcription subunit 61.7e-12490.59Show/hide
Query:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM
        MATPPPP  APPG  NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP     +   +  EYMLNEVM
Subjt:  MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP KETINFKEVKRVDHILASL
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASL

Query:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
        QRKLPPAPPPPPFPEGY PAPTA+ EKGPENQ  E QQPSADPIIDQGPAKRMKF
Subjt:  QRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

SwissProt top hitse value%identityAlignment
F4IXJ7 Mediator of RNA polymerase II transcription subunit 67.3e-7757.24Show/hide
Query:  TAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVMEPHLFVFR
        TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHP     +   + +EYML +  EP+LFVFR
Subjt:  TAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVMEPHLFVFR

Query:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY---
        KQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                                     G+   
Subjt:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY---

Query:  ---VDSENESEEVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
            +++NE  E KPA ET++ KE+KRVD IL SL RKL P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  ---VDSENESEEVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

Q54PN3 Putative mediator of RNA polymerase II transcription subunit 61.4e-2437.77Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPSIFLN-SRIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQA
        D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+ +  S   N   +EY L + +EP  F+  KQ R  P  V     YY+++G+IYQA
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPSIFLN-SRIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQA

Query:  PQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPE
        P+L  VF +RVS+++ ++S+AF + SS +      GY   +D  N+ E+ K  A      ++ KR+D ++ SL  K P    P   P+
Subjt:  PQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPE

Q7Q107 Mediator of RNA polymerase II transcription subunit 61.4e-1933.19Show/hide
Query:  ICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPSIFLN-SRIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQ
        I + D  W+    L+   V DYF+   +PFYD TCNNE +RM+     +  N + +EY+   V +P L+V RKQ R  P + TPM  YYI+ G++YQAP 
Subjt:  ICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPSIFLN-SRIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQ

Query:  LCNVFAARVSRALYYISKAFTTASS--------------KLEKIGYVDSENESEEVKPAK-ETINFKEVKRVDHILASLQRKLP-PAPPPPPFPEGYAPA
        L +VF +R+   ++++  AF  ASS                 K     ++ ++++  P K E  +  + +RVD +L  L RK P P P     P G  P+
Subjt:  LCNVFAARVSRALYYISKAFTTASS--------------KLEKIGYVDSENESEEVKPAK-ETINFKEVKRVDHILASLQRKLP-PAPPPPPFPEGYAPA

Query:  PTADTEKGPENQQGESQQPSAD-PIIDQGPAK
         TA+         G+S    AD  +I Q P +
Subjt:  PTADTEKGPENQQGESQQPSAD-PIIDQGPAK

Q8MSX2 Mediator of RNA polymerase II transcription subunit 62.4e-1935.6Show/hide
Query:  LDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPSIFLNS-RIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL
        L    V DYF    +PFYD  CNNE +RM+ + P    N   +EY+L  V EP L+V RKQ R  P + TP+  YYI+ G++Y+AP L NV  +R+   +
Subjt:  LDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPSIFLNS-RIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL

Query:  YYISKAFTTASS--------------KLEKIGYVDSENESEEVKPAKE--TINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTAD
          +  AF  ASS                 K+    S+++ ++   AK+  +    + +RVD +LA L RK PP P PP       P P  D
Subjt:  YYISKAFTTASS--------------KLEKIGYVDSENESEEVKPAKE--TINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTAD

Q921D4 Mediator of RNA polymerase II transcription subunit 65.3e-1934.73Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPSIFLNSR--IEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+ +     LN    IEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G I
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPSIFLNSR--IEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI

Query:  YQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAP
        YQAP L +V  +RV  A++ I  AF  A S        GY        E E+VKP     +E  +  + +RVD +L  L++K PP        E   P  
Subjt:  YQAPQLCNVFAARVSRALYYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAP

Query:  TADTEKGPENQQGESQQPSADPIIDQ------GPAKRMK
         A  E  P  +  +S++  +   I Q       P KRM+
Subjt:  TADTEKGPENQQGESQQPSADPIIDQ------GPAKRMK

Arabidopsis top hitse value%identityAlignment
AT3G21350.1 RNA polymerase transcriptional regulation mediator-related1.7e-8467.47Show/hide
Query:  TAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVMEPHLFVFR
        TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHP     +   + +EYML +  EP+LFVFR
Subjt:  TAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVMEPHLFVFR

Query:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPAKETINFKEVKRVDHILASLQRKLPP
        KQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I  VD+EN++E  E KPA ET++ KE+KRVD IL SL RKL P
Subjt:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPAKETINFKEVKRVDHILASLQRKLPP

Query:  APPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
         PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  APPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

AT3G21350.2 RNA polymerase transcriptional regulation mediator-related5.2e-7857.24Show/hide
Query:  TAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVMEPHLFVFR
        TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHP     +   + +EYML +  EP+LFVFR
Subjt:  TAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP----SIFLNSRIEYMLNEVMEPHLFVFR

Query:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY---
        KQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                                     G+   
Subjt:  KQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI-------------------------------------GY---

Query:  ---VDSENESEEVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF
            +++NE  E KPA ET++ KE+KRVD IL SL RKL P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  ---VDSENESEEVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCACCACCACCGACGACGGCCCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGATGCCAGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTG
CTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCA
GAATGCGCTCCATTCACCCCTCGATCTTTCTCAACTCTCGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCATCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGT
CCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAATGTTTTTGCTGCCCGAGTTAGTCGGGCACTGTATTA
CATATCAAAGGCCTTCACCACGGCTTCCTCAAAGTTGGAGAAGATAGGATATGTTGATTCCGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTA
AGGAAGTTAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTCCTGCTCCCACAGCAGAT
ACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCAGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATTCAACCCATACCGTGGAGGTTGAGATGTTTTGCTACATGACTTCTCCCTCTTCGCTCTCGGTCGTGATCGTCGGGAAACAAAGAAAAAGGGTGTAGTGCTTTCACTGA
CGGCGGAGGGATCTGTAAAATTCAACACTTCGTGCCCAGAAAAGTAAAATAGCCCACAAATGGCAACTCCACCACCACCGACGACGGCCCCGCCAGGGACCGGGAATTTC
GAGGGGGGGCCGATGCCAGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGT
TTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCTCGATCTTTCTCAACTCTCGCATAGAGTACA
TGCTGAATGAAGTTATGGAGCCTCATCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATC
TACCAGGCGCCTCAACTTTGCAATGTTTTTGCTGCCCGAGTTAGTCGGGCACTGTATTACATATCAAAGGCCTTCACCACGGCTTCCTCAAAGTTGGAGAAGATAGGATA
TGTTGATTCCGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGC
CACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTCCTGCTCCCACAGCAGATACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCAGCA
GATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGAAGAGTTTAGGCTACTTTGCCTGTTGAGAAGCCTATTTAATCCTGCAATTGAAATTCAATATGGAT
GACATCCCTGCACAAAGCATGGTGAGTTGTGACCCCCCCCCCCCCCCAAAAGAAAAAAAGAAGAAAAAAAGGACAAAAAGTTGGAATCTGCCTTGTGAAAAGCCTGTAGT
TTTAGACTTAACTTGAGCTAATCCATTGTTTTAGCAGTAACTTGTACTACACTACCATGTAACCATCACTTCCTGATTTCGTTAGCTAGAATTGTTCGATACTCATATGA
CATACCACTAGTTGCTGTATCTTTGTATCGTGATAACTTGGGAAGAAGATTTTTAATATCGAACATGGTAATACAATTCCGCAATATCTTG
Protein sequenceShow/hide protein sequence
MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPSIFLNSRIEYMLNEVMEPHLFVFRKQKRDG
PEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTAD
TEKGPENQQGESQQPSADPIIDQGPAKRMKF