CuGenDBv2

Gene ID	IVF0002259
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribonuclease H
Genome location	chr06:23475578..23475799
RNA-Seq Expression	IVF0002259
Synteny	IVF0002259
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037720.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]

4.76e-36

86.3

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        +A+VNTSSNTWT+MFDGAT EIGHGVGAILMSP+GKWYPLTAKLYFD TNNMA+YEA S+GVR+AYEMKIKNL
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

KAA0046609.1 hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa]

4.08e-41

95.89

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        MALVNTSSNTWTMMFDGATNEIGHGVGAILMSP+GKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK+K L
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

KAA0049671.1 uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa]

1.42e-39

91.78

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        MA++NTS NTWTMMFDGATNEIGHGVG ILMSP+GKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIK L
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

TYK00092.1 protein NYNRIN-like [Cucumis melo var. makuwa]

3.83e-40

95.89

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        MALVNTSSNTWTMMFDGATNEIGHGV AILMSP+GKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIK L
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

TYK05800.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.49e-40

93.15

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        MALVNTSSNTWTM FDGATNEIGHGVGAILMS +GKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK+K L
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2W3 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H

2.9e-29

86.3

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        +A+VNTSSNTWT+MFDGAT EIGHGVGAILMSP+GKWYPLTAKLYFD TNNMA+YEA S+GVR+AYEMKIKNL
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

A0A5A7TZF3 Ribonuclease H

3.9e-34

95.89

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        MALVNTSSNTWTMMFDGATNEIGHGVGAILMSP+GKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK+K L
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

A0A5A7U7X5 Ribonuclease H

7.4e-33

91.78

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        MA++NTS NTWTMMFDGATNEIGHGVG ILMSP+GKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIK L
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

A0A5D3BMZ2 Protein NYNRIN-like

2.5e-33

95.89

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        MALVNTSSNTWTMMFDGATNEIGHGV AILMSP+GKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIK L
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

A0A5D3C389 Transposon Ty3-I Gag-Pol polyprotein

2.2e-32

93.15

Show/hide

Query:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL
        MALVNTSSNTWTM FDGATNEIGHGVGAILMS +GKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMK+K L
Subjt:  MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCATTAGTAAATACATCATCGAATACATGGACAATGATGTTTGATGGAGCCACGAACGAAATAGGGCACGGTGTGGGAGCAATTTTGATGTCCCCCAATGGGAAGTG
GTACCCTTTAACTGCTAAGTTATATTTCGATTGCACCAATAACATGGCTGAGTATGAGGCATGTAGTATGGGAGTGCGAATGGCATACGAGATGAAAATAAAAAATTTAT
GA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MALVNTSSNTWTMMFDGATNEIGHGVGAILMSPNGKWYPLTAKLYFDCTNNMAEYEACSMGVRMAYEMKIKNL

IVF0002259 (gene) of Melon (IVF77) v1 genome