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IVF0002273 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002273
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
Genome locationchr09:530817..532844
RNA-Seq ExpressionIVF0002273
SyntenyIVF0002273
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459591.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis melo]6.12e-51100Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

XP_011656085.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus]2.49e-5098.85Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVA EFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

XP_022141880.1 succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia]7.76e-3987.5Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VAAEFRRNA QID KNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD

XP_023525064.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo]1.21e-3781.18Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        KLSG+Q+QVLSLYRAFLRAAR+KS EDR+Q+ES+V+AEFRRNAK IDRKNFIYIEYLLRRGNKQLDQL+SPATV LS+L  N  P
Subjt:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

XP_038890134.1 succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]1.83e-4387.36Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVAAEFRRNAKQIDRKNFI+IEYLLRRGNKQLDQLKSP TVR ST++P+ EP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

TrEMBL top hitse value%identityAlignment
A0A0A0KST3 Uncharacterized protein4.5e-3798.85Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVA EFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

A0A1S3CAJ2 succinate dehydrogenase assembly factor 1, mitochondrial1.6e-37100Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

A0A6J1CJC1 succinate dehydrogenase assembly factor 1, mitochondrial2.2e-2887.5Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VAAEFRRNA QID KNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLD

A0A6J1EX50 LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial7.2e-2780Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        KLSG+QKQVLSLY AFLRAAR+KS EDR+++ES+V+AEFRRNAK IDRK+FIYIEYLLRRGNKQLDQL+SPATV LSTL  N  P
Subjt:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

A0A6J1I7F5 succinate dehydrogenase assembly factor 1, mitochondrial1.8e-2577.65Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP
        KLSG+Q QVLSLYRAFLRAAR+KS EDR+ +ES+V+AEFRRNAK ID KNFIYIEYLLRRG+KQLDQL+SPATV LS+L  N  P
Subjt:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP

SwissProt top hitse value%identityAlignment
A6ZYX9 Succinate dehydrogenase assembly factor 1, mitochondrial1.8e-0643.66Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        +LSGLQK+VL LYRA +R A TK  E++    + +  EF +  + + RK+F  IE+LLR GNK++     P
Subjt:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial6.1e-0743.96Show/hide
Query:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL----DPNPEP
        M++LS LQ+QVLSLYR  LRA R K        E+ V AEFR++A  + R + + IEYL RRG +QL  L+S     + T      P  EP
Subjt:  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL----DPNPEP

Q3E785 Succinate dehydrogenase assembly factor 1, mitochondrial1.8e-0643.66Show/hide
Query:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        +LSGLQK+VL LYRA +R A TK  E++    + +  EF +  + + RK+F  IE+LLR GNK++     P
Subjt:  KLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Q54HG5 Succinate dehydrogenase assembly factor 1A, mitochondrial6.8e-0640Show/hide
Query:  SGLQKQVLSLYRAFLRAARTKSVED-RQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        SGLQK VLSLYR+FLR +  K +++    + + +  +FR  A  I +++   IE LL +G +QL+Q++ P
Subjt:  SGLQKQVLSLYRAFLRAARTKSVED-RQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Q9US02 Succinate dehydrogenase assembly factor 1, mitochondrial6.8e-0641.43Show/hide
Query:  LSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        LSGLQ+QV+  YR  L AA+ K     ++  + V  EFR+N + I +++F YIE+LLR G +Q +    P
Subjt:  LSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein1.3e-2570Show/hide
Query:  AKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL
        +KLSG+QKQVLSLYR FLRAAR++ +EDR+++E IV+ EFR N+K++DRKNF YIEYLLR G KQLDQLKSPA V LS++
Subjt:  AKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL

AT2G39725.2 LYR family of Fe/S cluster biogenesis protein1.3e-2570Show/hide
Query:  AKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL
        +KLSG+QKQVLSLYR FLRAAR++ +EDR+++E IV+ EFR N+K++DRKNF YIEYLLR G KQLDQLKSPA V LS++
Subjt:  AKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCTGCTCGTACCAAATCGGTTGAGGATCGACAGCAAATGGAATCGATTGT
CGCGGCCGAGTTTCGCCGCAACGCCAAGCAAATTGATCGGAAAAATTTCATCTACATTGAGTACCTTCTCCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGTCCTG
CCACAGTTCGATTGTCTACGCTCGATCCCAATCCCGAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
CAATCACATCACGTCAGTCTTGGAGGGGAAGATTAAGATCGGTTGGGTTTAAGAAGATTACGACCGGTTGGGATTAGTCTTGGAGAGGAAGCTACAATGGCGAAGCTCTC
AGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCTGCTCGTACCAAATCGGTTGAGGATCGACAGCAAATGGAATCGATTGTCGCGGCCGAGTTTC
GCCGCAACGCCAAGCAAATTGATCGGAAAAATTTCATCTACATTGAGTACCTTCTCCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGTCCTGCCACAGTTCGATTG
TCTACGCTCGATCCCAATCCCGAGCCTTGAAATTGGGTGTACATTTCTTCGATTATTGGGTATTACTCTTCTTGGTAGGATCAATTTTGAACCCTAGAAATTAAACTGCT
TTCTTTCTTTCCTTTTGATGATTATTTGTAATCTTAGGCATGAATGCAGTTTAGTAGTGGGAAGTGGTTGTAAATTGAGCAAATGTATCAACACCAATTTGGAAACTCTG
TCGGTTTTATTCACAAATTATTTGATTATGGGAGTATTCCATACCACTTACTTAATCAATTGCATTCACAACAATTATTCAATTGAAACGAGTAATGTCATGATAGCTCA
AATAGAGAAATGTCAAACTATTTATAACAAAATAGCAAAATAAATAAAACACTCACAGACTTCTATCAACCTTTCAACCTGAAAAGTTTCAAGTTTAGCAGTGTAATACC
TTGTGAGCTAAACTCTTGTTCTGACCTTTTGAACATATACAAAGTGATTATGGCATTTGATTGGTGTGACTTTGAAAGGGAATTTTGCAACCTATAACAAAGGGTGGTGA
AAGATATTTGTGAGCTGCTTAAAGTGTTTGTAACTTAGTCTCTCTTATTCTGCCTCCAAATTCAACACAGGTATTTAATTACCATCTCTCTCTCTATATATTTTATTGTT
TAACATTATTTTCTAACTTAAGCCATTTTTCCTTTTTAATCTCTGCTTCCAAGGCCTTCCTAAAATCGGCTGCTTTAAGTGGACTGTCATTTAAAAAATTGGGATATTTG
AAGGAGTTCAAAGACAAACGGACCGAAAGGAAACCATATAGATTCTACTTGACACAACTCAACTTTATAAGTGTTACATTAGTTCTTTGTCAAGCAGATCCATTGCTTAA
TGGTGGATCCAGAGAATCCGTGCTCGTAAGAAAGTGGTGAGAGATCATGAAGATGAAAATGAAGTGTCTTGGAGTGATTATTTTTGTTCGAATCATTTGCCCTTTCTAGC
TCCTTGTTTTTTAGGTGGAGGTTAAAAAGTTCGGTTATAGTTTGTGGTCTTACACTTACCCAATGTGCATGCGCATTCTTGTTTTTATCGAACGTTTTATTATCTAATGA
ATGCTTCTGTGATGTATTAAACATTGTGTATTGTGTTTGTATTATTTTTAATCCTAAAATTAGAATTACTTTACCACTA
Protein sequenceShow/hide protein sequence
MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSTLDPNPEP