; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0002280 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002280
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionbiogenesis of lysosome-related organelles complex 1 subunit 2
Genome locationchr07:10879104..10886588
RNA-Seq ExpressionIVF0002280
SyntenyIVF0002280
Gene Ontology termsNA
InterPro domainsIPR019269 - Biogenesis of lysosome-related organelles complex-1, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607085.1 Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbita argyrosperma subsp. sororia]7.42e-6689.26Show/hide
Query:  MAQKEER-LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVI
        MA+KEE+ LPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN RVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVI
Subjt:  MAQKEER-LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVI

Query:  SMLDKHVSMLESKVLSVCQNT
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHVSMLESKVLSVCQNT

XP_004137147.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus]1.41e-7496.69Show/hide
Query:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS
        MAQKEERLPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQLELLERMN RVAEEYKG+GDVASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVIS
Subjt:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

XP_008455567.1 PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis melo]1.26e-77100Show/hide
Query:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS
        MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS
Subjt:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

XP_022949044.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata]7.42e-6689.26Show/hide
Query:  MAQKEER-LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVI
        MA+KEE+ LPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN RVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVI
Subjt:  MAQKEER-LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVI

Query:  SMLDKHVSMLESKVLSVCQNT
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHVSMLESKVLSVCQNT

XP_038880795.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida]1.65e-7395.87Show/hide
Query:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS
        MAQKEE+ PNRDELAESLNEFFTSVSEMIKSDLLGSSNQL LLERMN RVAEEYKG+GDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS
Subjt:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

TrEMBL top hitse value%identityAlignment
A0A0A0KW18 Uncharacterized protein1.3e-5596.69Show/hide
Query:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS
        MAQKEERLPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQLELLERMN RVAEEYKG+GDVASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVIS
Subjt:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

A0A1S3C0T0 biogenesis of lysosome-related organelles complex 1 subunit 26.5e-58100Show/hide
Query:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS
        MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS
Subjt:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

A0A6J1GBP4 biogenesis of lysosome-related organelles complex 1 subunit 25.5e-4989.26Show/hide
Query:  MAQKEE-RLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVI
        MA+KEE +LPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN RVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVI
Subjt:  MAQKEE-RLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVI

Query:  SMLDKHVSMLESKVLSVCQNT
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHVSMLESKVLSVCQNT

A0A6J1KEZ0 biogenesis of lysosome-related organelles complex 1 subunit 25.5e-4989.26Show/hide
Query:  MAQKEE-RLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVI
        MA+KEE +LPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN RVAEEYKG GDVASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVI
Subjt:  MAQKEE-RLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVI

Query:  SMLDKHVSMLESKVLSVCQNT
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHVSMLESKVLSVCQNT

W9R9H2 Uncharacterized protein7.4e-3872.65Show/hide
Query:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS
        MA+K ++ P+RDELAESLN+ FTSV  M+KS+L G++NQLELLE+MN RV EEYKGYGDVASG+RVFVEQLKSKSG FDEY  +IE I+ QVTEFEAVIS
Subjt:  MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVC
        MLD++VS LESK+ S C
Subjt:  MLDKHVSMLESKVLSVC

SwissProt top hitse value%identityAlignment
F4K657 Biogenesis of lysosome-related organelles complex 1 subunit 25.0e-3164.42Show/hide
Query:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSML
        +RD+LAESL   FTSVS M+KS+L G++N L+LLE+MN RVA EY   GDVA+G+RVF EQ+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+L
Subjt:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSML

Query:  ESKV
        ESK+
Subjt:  ESKV

Q54Y67 Biogenesis of lysosome-related organelles complex 1 subunit 25.7e-1133.94Show/hide
Query:  LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVS
        LP  ++L  S  E FT VS  IKS+L  + +   LL +MN+  + +Y+   +V  G+ VF+  LK K   F  Y  +I +++  VT+ E  + +LD++  
Subjt:  LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVS

Query:  MLESKVLSV
         LE KV ++
Subjt:  MLESKVLSV

Arabidopsis top hitse value%identityAlignment
AT5G49550.1 Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.3.5e-3264.42Show/hide
Query:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSML
        +RD+LAESL   FTSVS M+KS+L G++N L+LLE+MN RVA EY   GDVA+G+RVF EQ+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+L
Subjt:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSML

Query:  ESKV
        ESK+
Subjt:  ESKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCAGAAAGAGGAGCGATTACCGAACAGAGACGAGCTCGCCGAGTCGCTTAATGAATTCTTCACCAGCGTGTCCGAAATGATCAAATCGGACCTTCTTGGATCAAG
CAATCAGCTGGAACTTTTAGAGAGAATGAACTCGAGGGTGGCTGAAGAGTACAAAGGTTATGGGGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAGTTGAAGTCAA
AGAGTGGTGGGTTTGATGAGTATATACACCAAATTGAGAAAATAGAACATCAGGTGACCGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGTTGGAG
TCCAAGGTGTTGTCTGTTTGTCAAAACACGCCTTAA
mRNA sequenceShow/hide mRNA sequence
AATTAATAGCGCTTGGCTGTTGTCACTAACTTGTCGTCCAAGGTCCAGCGGCTGTTCCGTGTCCCGACGAGCCGACGGCGACGGCGATTGATCAAAATTCCACCAACAAA
GACACAAGTTTCACGGCCTGTGAAACCCTATTTGCAAGACTCAACGGTTTACATCTTATTTCATGGCCCAGAAAGAGGAGCGATTACCGAACAGAGACGAGCTCGCCGAG
TCGCTTAATGAATTCTTCACCAGCGTGTCCGAAATGATCAAATCGGACCTTCTTGGATCAAGCAATCAGCTGGAACTTTTAGAGAGAATGAACTCGAGGGTGGCTGAAGA
GTACAAAGGTTATGGGGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAGTTGAAGTCAAAGAGTGGTGGGTTTGATGAGTATATACACCAAATTGAGAAAATAGAAC
ATCAGGTGACCGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGTTGGAGTCCAAGGTGTTGTCTGTTTGTCAAAACACGCCTTAATGAAGAGATTGA
TTTTTTTCATCTTCAAATTTCAGATCGCTTCTTTTCTTTATGTTTATGGTTCTATATCGTGGAAATTTTTTATGATATCTTATTCATTGGAAGTTGGCGGCGCAAAAAAG
TTAGCATCTTGTTTCCCTTCCTGCTACGTCTGTATTGTTCTTTTATGGTTATGGGAAATAGCACTCTTGTTGTAGTTGACACTGG
Protein sequenceShow/hide protein sequence
MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDVASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSMLE
SKVLSVCQNTP