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IVF0002285 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002285
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:8276903..8277163
RNA-Seq ExpressionIVF0002285
SyntenyIVF0002285
Gene Ontology termsGO:0090481 - pyrimidine nucleotide-sugar transmembrane transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0015165 - pyrimidine nucleotide-sugar transmembrane transporter activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037133.1 retrotransposon protein [Cucumis melo var. makuwa]1.53e-1268.75Show/hide
Query:  SLWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGV
        ++WVSSPWV   EKKG G EKNGVKVG+F++R S F+RG IL+KERGV
Subjt:  SLWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGV

KAA0044825.1 transcription factor bHLH36-like [Cucumis melo var. makuwa]1.49e-1067.39Show/hide
Query:  VFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVKKER
        V VA+KKG G EKNGVKVG+F++  SSF+RG +L+K+RGV VKKER
Subjt:  VFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVKKER

KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]2.57e-0774.29Show/hide
Query:  SLWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSS
        ++WVSSPWV VAEKKG G EKNGVKV +F+V CSS
Subjt:  SLWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSS

KAA0054034.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.39e-1367.35Show/hide
Query:  LWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCV
        LWVSSPWV V +KKG G EKNG KVG+F++R SSF+R  IL+KE GVC+
Subjt:  LWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCV

TYJ96889.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.81e-1264.15Show/hide
Query:  LWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVKKER
        LWVSSPWV V +KKG G EKNG KVG+F++R SSF+R  IL+KE GV   KE+
Subjt:  LWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVKKER

TrEMBL top hitse value%identityAlignment
A0A5A7T2E4 Retrotransposon protein1.0e-0968.75Show/hide
Query:  SLWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGV
        ++WVSSPWV   EKKG G EKNGVKVG+F++R S F+RG IL+KERGV
Subjt:  SLWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGV

A0A5A7TTV0 Transcription factor bHLH36-like4.8e-0767.39Show/hide
Query:  VFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVKKER
        V VA+KKG G EKNGVKVG+F++  SSF+RG +L+K+RGV VKKER
Subjt:  VFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVKKER

A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X21.7e-0470Show/hide
Query:  RGSP-SLWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSS
        + SP ++WVSSPWV VAEKKG G EKNGVKV +F+V CSS
Subjt:  RGSP-SLWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSS

A0A5A7UFR0 Ty3-gypsy retrotransposon protein6.1e-1066Show/hide
Query:  LWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVK
        LWVSSPWV V +KKG G EKNG KVG+F++R SSF+R  IL+KE GVC++
Subjt:  LWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVK

A0A5D3BCV7 Ty3-gypsy retrotransposon protein6.7e-0964.15Show/hide
Query:  LWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVKKER
        LWVSSPWV V +KKG G EKNG KVG+F++R SSF+R  IL+KE GV   KE+
Subjt:  LWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVKKER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAAGAAAGATCAAGAACTCACCGGCCACGATATGGGTCTCCTCGTCGTGGGTCTCCATCGCTATGGGTCTCCTCGCCGTGGGTCTTCGTTGCCGAGAAGAAAGG
ATGTGGATATGAGAAGAATGGGGTTAAGGTTGGAATTTTTCTCGTGCGTTGTTCGTCGTTCATGAGGGGAGAGATTTTGGAGAAGGAAAGGGGAGTGTGCGTGAAGAAGG
AAAGGGGAGTGTGTGTGAAGAAGGAAAGGGAGAGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAAGAAAGATCAAGAACTCACCGGCCACGATATGGGTCTCCTCGTCGTGGGTCTCCATCGCTATGGGTCTCCTCGCCGTGGGTCTTCGTTGCCGAGAAGAAAGG
ATGTGGATATGAGAAGAATGGGGTTAAGGTTGGAATTTTTCTCGTGCGTTGTTCGTCGTTCATGAGGGGAGAGATTTTGGAGAAGGAAAGGGGAGTGTGCGTGAAGAAGG
AAAGGGGAGTGTGTGTGAAGAAGGAAAGGGAGAGATTTTGA
Protein sequenceShow/hide protein sequence
MKKERSRTHRPRYGSPRRGSPSLWVSSPWVFVAEKKGCGYEKNGVKVGIFLVRCSSFMRGEILEKERGVCVKKERGVCVKKERERF