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IVF0002310 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002310
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGypsy/ty3 element polyprotein
Genome locationchr10:24860897..24861142
RNA-Seq ExpressionIVF0002310
SyntenyIVF0002310
Gene Ontology termsGO:0010150 - leaf senescence (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047598.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]1.61e-3171.6Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
        MH MLTAMY+DHQRQLGG KLT I   KRKVR E+VVE+E D+ E S+S+ETG G D+IK KKLE+P+FN EDLDGWFYRA
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA

KAA0051937.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]4.60e-3176.54Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
        MH MLT MY D QRQLGG +LT IS  KRKVR E VVEE+ADEGETSMSIETG G D+IK KKLE+PIFN ED DGWFYRA
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA

KAA0054103.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]1.62e-50100Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
        MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA

TYK05776.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.37e-3178.95Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDG
        MH MLTAMYEDHQRQLGG KLT +S  KRKVR E+VVEEEADE ETSMSIETG G DRIK KKLE+P+FN EDL+G
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDG

TYK08255.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]8.12e-3271.6Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
        MH MLTAMY+DHQRQLGG KLT I   KRKVR E+VVE+E D+ E S+S+ETG G D+IK KKLE+P+FN EDLDGWFYRA
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA

TrEMBL top hitse value%identityAlignment
A0A5A7TXG3 Gypsy/ty3 element polyprotein1.1e-2471.6Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
        MH MLTAMY+DHQRQLGG KLT I   KRKVR E+VVE+E D+ E S+S+ETG G D+IK KKLE+P+FN EDLDGWFYRA
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA

A0A5A7UBY8 Gypsy/ty3 element polyprotein9.1e-2476.54Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
        MH MLT MY D QRQLGG +LT IS  KRKVR E VVEE+ADEGETSMSIETG G D+IK KKLE+PIFN ED DGWFYRA
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA

A0A5D3C600 Ty3-gypsy retrotransposon protein1.8e-2478.95Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDG
        MH MLTAMYEDHQRQLGG KLT +S  KRKVR E+VVEEEADE ETSMSIETG G DRIK KKLE+P+FN EDL+G
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDG

A0A5D3C9T2 Gypsy/ty3 element polyprotein1.1e-2471.6Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
        MH MLTAMY+DHQRQLGG KLT I   KRKVR E+VVE+E D+ E S+S+ETG G D+IK KKLE+P+FN EDLDGWFYRA
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA

A0A5D3E030 Gypsy/ty3 element polyprotein1.9e-37100Show/hide
Query:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
        MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA
Subjt:  MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACACCATGTTGACAGCGATGTACGAAGACCATCAGAGACAACTAGGAGGATTGAAACTGACTGAGATAAGCATGAGAAAGAGGAAGGTCCGTATTGAAGATGTTGT
CGAAGAGGAAGCGGATGAAGGAGAAACGTCCATGAGCATAGAAACAGGGGTCGGACATGATCGAATCAAGCTTAAAAAATTGGAGTTGCCCATTTTTAACGAGGAAGACC
TGGATGGTTGGTTCTATAGAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCACACCATGTTGACAGCGATGTACGAAGACCATCAGAGACAACTAGGAGGATTGAAACTGACTGAGATAAGCATGAGAAAGAGGAAGGTCCGTATTGAAGATGTTGT
CGAAGAGGAAGCGGATGAAGGAGAAACGTCCATGAGCATAGAAACAGGGGTCGGACATGATCGAATCAAGCTTAAAAAATTGGAGTTGCCCATTTTTAACGAGGAAGACC
TGGATGGTTGGTTCTATAGAGCATAG
Protein sequenceShow/hide protein sequence
MHTMLTAMYEDHQRQLGGLKLTEISMRKRKVRIEDVVEEEADEGETSMSIETGVGHDRIKLKKLELPIFNEEDLDGWFYRA