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IVF0002318 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002318
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:18343355..18343708
RNA-Seq ExpressionIVF0002318
SyntenyIVF0002318
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041970.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.18e-3886.25Show/hide
Query:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWVK
        +VDNGTF SGYLVQVQKLMKEKIP SNIQVT NLESRV ILKKQYTVIA+MMG ACN FG NE+RKCIEAEK VFDDWVK
Subjt:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWVK

KAA0060652.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.84e-4697.47Show/hide
Query:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV
        +VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDW 
Subjt:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV

KGN51053.1 hypothetical protein Csa_009100 [Cucumis sativus]4.02e-3871.84Show/hide
Query:  MASTNSKATK------------VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV
        MASTNSKATK              NGTF  GYLVQVQKLMKEKIP SNIQVT NLE RV ILKKQYT I EMMG +C+ FG NEKRKCIEAEKFVFDD V
Subjt:  MASTNSKATK------------VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV

Query:  KER
        K R
Subjt:  KER

TYK02222.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.77e-4697.47Show/hide
Query:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV
        +VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDW 
Subjt:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]2.23e-3672.28Show/hide
Query:  MASTNSKATK------------VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV
        MASTNSKATK              NGTF  GYLVQVQKLMKEKIP SNIQVT NLE RV ILKKQYT I EMMG +C+ FG NEKRKCIEAEKFVFDD V
Subjt:  MASTNSKATK------------VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV

Query:  K
        K
Subjt:  K

TrEMBL top hitse value%identityAlignment
A0A0A0KNB4 Uncharacterized protein5.3e-2871.15Show/hide
Query:  MASTNSKATK------------VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV
        MASTNSKATK              NGTF  GYLVQVQKLMKEKIP SNIQVT NLE RV ILKKQYT I EMMG +C+ FG NEKRKCIEAEKFVFDD V
Subjt:  MASTNSKATK------------VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWV

Query:  KERR
        K R+
Subjt:  KERR

A0A5A7TF70 Putative nuclease HARBI19.6e-3084.34Show/hide
Query:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWVKERR
        +VDNGTF SGYLVQVQKLMKEKIP SNIQVT NLESRV ILKKQYTVIA+MMG ACN FG NE+RKCIEAEK VFDDWVK  R
Subjt:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWVKERR

A0A5A7U7F7 Retrotransposon protein1.5e-2764.66Show/hide
Query:  MASTNSKATK------------------------VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKC
        MASTNSKATK                         DNGTF  GYLVQVQKLMKEKI  SNIQVT NL+SRV ILKKQY  IAEMMG AC+GFG NE+RKC
Subjt:  MASTNSKATK------------------------VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKC

Query:  IEAEKFVFDDWVKERR
        IEAEK VFDDWVK  R
Subjt:  IEAEKFVFDDWVKERR

A0A5A7UXQ6 Putative nuclease HARBI11.8e-3698.72Show/hide
Query:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDW
        +VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDW
Subjt:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDW

A0A5D3BTU3 Putative nuclease HARBI11.8e-3698.72Show/hide
Query:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDW
        +VDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDW
Subjt:  KVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCGACAAATTCAAAAGCCACTAAGGTTGATAATGGAACATTCAATTCGGGATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCCTAGAAGCAACAT
ACAAGTGACTCTAAATCTAGAGTCGAGAGTAAACATTTTAAAGAAGCAGTACACTGTTATAGCAGAGATGATGGGGCGAGCGTGTAATGGATTTGGCTGTAATGAGAAAC
GAAAGTGTATTGAGGCAGAGAAATTCGTGTTCGATGACTGGGTAAAGGAAAGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCGACAAATTCAAAAGCCACTAAGGTTGATAATGGAACATTCAATTCGGGATATTTGGTACAAGTACAAAAACTAATGAAAGAAAAAATTCCTAGAAGCAACAT
ACAAGTGACTCTAAATCTAGAGTCGAGAGTAAACATTTTAAAGAAGCAGTACACTGTTATAGCAGAGATGATGGGGCGAGCGTGTAATGGATTTGGCTGTAATGAGAAAC
GAAAGTGTATTGAGGCAGAGAAATTCGTGTTCGATGACTGGGTAAAGGAAAGAAGATGA
Protein sequenceShow/hide protein sequence
MASTNSKATKVDNGTFNSGYLVQVQKLMKEKIPRSNIQVTLNLESRVNILKKQYTVIAEMMGRACNGFGCNEKRKCIEAEKFVFDDWVKERR