; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0002372 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002372
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCollagen triple helix repeat protein
Genome locationchr02:17901178..17901336
RNA-Seq ExpressionIVF0002372
SyntenyIVF0002372
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039080.1 reticulon-like protein B2 [Cucumis melo var. makuwa]1.98e-0474.29Show/hide
Query:  KTMDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRR
        KTMDPTKRNNQA+TMDPTK      RKS GCR RR
Subjt:  KTMDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRR

KAA0051389.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]1.08e-1374.51Show/hide
Query:  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKK------NSLAKRKSPGCRGRR
        MDP KRK QTKTMDPTKRNN+AKTM+PTK+      N+ AKRKSPGCRGRR
Subjt:  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKK------NSLAKRKSPGCRGRR

KAA0060038.1 hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa]1.37e-1475.47Show/hide
Query:  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSLAKRKSP--------GCRGRR
        MDP KRKSQTKTMDPTKRNNQAKTMDPTK+NSL KR SP         CRGRR
Subjt:  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSLAKRKSP--------GCRGRR

TYK01567.1 putative transposable element-related protein [Cucumis melo var. makuwa]4.78e-0877.5Show/hide
Query:  MDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRRCAKEDDE
        MDPTKRNNQAKTMDPTK+NSL KRKS GCR      EDDE
Subjt:  MDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRRCAKEDDE

TYK22248.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]1.08e-1374.51Show/hide
Query:  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSL------AKRKSPGCRGRR
        MDP KRK QTKTMDPTKRNN+AKTM+PTK+N+       AKRKSPGCRGRR
Subjt:  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSL------AKRKSPGCRGRR

TrEMBL top hitse value%identityAlignment
A0A5A7UD84 Collagen triple helix repeat protein9.0e-0974.51Show/hide
Query:  MDPTKRKSQTKTMDPTKRNNQAKTMD------PTKKNSLAKRKSPGCRGRR
        MDP KRK QTKTMDPTKRNN+AKTM+      PTK+N+ AKRKSPGCRGRR
Subjt:  MDPTKRKSQTKTMDPTKRNNQAKTMD------PTKKNSLAKRKSPGCRGRR

A0A5A7UXT0 Uncharacterized protein1.8e-0975.47Show/hide
Query:  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSLAKRKS--------PGCRGRR
        MDP KRKSQTKTMDPTKRNNQAKTMDPTK+NSL KR S        P CRGRR
Subjt:  MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSLAKRKS--------PGCRGRR

A0A5D3BQB8 Putative transposable element-related protein6.1e-0577.5Show/hide
Query:  MDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRRCAKEDDE
        MDPTKRNNQAKTMDPTK+NSL KRKS GCR      EDDE
Subjt:  MDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRRCAKEDDE

A0A5D3DFL7 Collagen triple helix repeat protein9.0e-0974.51Show/hide
Query:  MDPTKRKSQTKTMDPTKRNNQAKTMD------PTKKNSLAKRKSPGCRGRR
        MDP KRK QTKTMDPTKRNN+AKTM+      PTK+N+ AKRKSPGCRGRR
Subjt:  MDPTKRKSQTKTMDPTKRNNQAKTMD------PTKKNSLAKRKSPGCRGRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGACGAAGAGGAAGAGTCAGACAAAAACTATGGATCCGACGAAGAGGAACAATCAGGCAAAAACTATGGATCCGACGAAGAAGAACAGTCTAGCAAAGAGGAA
AAGTCCGGGTTGTAGAGGAAGACGGTGTGCAAAGGAAGATGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCGACGAAGAGGAAGAGTCAGACAAAAACTATGGATCCGACGAAGAGGAACAATCAGGCAAAAACTATGGATCCGACGAAGAAGAACAGTCTAGCAAAGAGGAA
AAGTCCGGGTTGTAGAGGAAGACGGTGTGCAAAGGAAGATGATGAGTGA
Protein sequenceShow/hide protein sequence
MDPTKRKSQTKTMDPTKRNNQAKTMDPTKKNSLAKRKSPGCRGRRCAKEDDE