; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0002436 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002436
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionphotosystem I reaction center subunit VI, chloroplastic
Genome locationchr04:14657730..14658844
RNA-Seq ExpressionIVF0002436
SyntenyIVF0002436
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018324.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]7.01e-9597.22Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_008447512.1 PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo]2.54e-97100Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_011651500.1 photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus]1.21e-9597.92Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022955723.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]2.45e-9597.92Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_023529177.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita pepo subsp. pepo]4.06e-9497.22Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQS RPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein1.1e-7297.92Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAGAKLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A1S3BI80 photosystem I reaction center subunit VI, chloroplastic5.9e-74100Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A5D3C9C3 Photosystem I reaction center subunit VI5.9e-74100Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1GUS6 photosystem I reaction center subunit VI, chloroplastic-like1.9e-7297.92Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like1.9e-7297.92Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

SwissProt top hitse value%identityAlignment
A2Y7D9 Photosystem I reaction center subunit VI, chloroplastic1.2e-5274.65Show/hide
Query:  LATLAAVQPATVKGLGGSSLAGAKLPLRPS-RQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL
        +A+L AVQP  VKGL GSS++G KL +RPS R   R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLL
Subjt:  LATLAAVQPATVKGLGGSSLAGAKLPLRPS-RQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL

Query:  LKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LKFLLLGGG+ +AY SA+A  D+LPIKKGPQLPP  GPRGKI
Subjt:  LKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

O04006 Photosystem I reaction center subunit VI, chloroplastic7.2e-6181.38Show/hide
Query:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP + VKGLGGSSL GAKL ++PSRQSF+PK+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA++  DVLPIK+GPQ  PKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

P22179 Photosystem I reaction center subunit VI, chloroplastic1.1e-6179.86Show/hide
Query:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP T+KGL GSS+AG KL ++P+RQSF+  N ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFL+LGGG+ L Y SA AP DVLPI +GPQ PPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic3.2e-6182.07Show/hide
Query:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP A VKGLGGSSLAGAKL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic1.2e-6080Show/hide
Query:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P A +KGLGGSSLAGAKL ++PSR SF+PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H22.3e-6282.07Show/hide
Query:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP A VKGLGGSSLAGAKL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

AT3G16140.1 photosystem I subunit H-18.7e-6280Show/hide
Query:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P A +KGLGGSSLAGAKL ++PSR SF+PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-ATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTAGCAACATTAGCTGCCGTTCAACCGGCCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGAGCTT
CAGACCAAAAAACTTCAAGGCTGGTGCTGTTGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGACTTGGGCAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGT
GGTGCTACTTTAGCTTATTACAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTTAGCAACATTAGCTGCCGTTCAACCGGCCACCGTAAAGGGTCTTGGTGGAAGCTCCCTTGCCGGAGCCAAGCTCCCTCTCAGACCATCTCGCCAGAGCTT
CAGACCAAAAAACTTCAAGGCTGGTGCTGTTGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGACTTGGGCAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGT
GGTGCTACTTTAGCTTATTACAGTGCTACTGCCCCAGATGATGTTCTTCCCATTAAGAAAGGACCTCAACTTCCACCGAAACTTGGGCCACGTGGCAAGATCTAA
Protein sequenceShow/hide protein sequence
MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGG
GATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI