CuGenDBv2

Gene ID	IVF0002460
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Genome location	chr09:17635416..17635718
RNA-Seq Expression	IVF0002460
Synteny	IVF0002460
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032476.1 reverse transcriptase [Cucumis melo var. makuwa]

1.70e-62

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+VLKKVGNTSYRV LPTWMKIYPVIHVSNLKPYHQDTEDLQRN+VTRP IDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

KAA0038841.1 reverse transcriptase [Cucumis melo var. makuwa]

2.85e-63

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+VLKKVGNTSYRV LPTWMKIYPVIHVSNLKPYHQDTEDLQRN+VTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

KAA0050844.1 reverse transcriptase [Cucumis melo var. makuwa]

1.52e-62

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+VLKKVGNTSYRV LPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

TYJ98540.1 reverse transcriptase [Cucumis melo var. makuwa]

5.66e-63

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

TYK15858.1 reverse transcriptase [Cucumis melo var. makuwa]

1.49e-61

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+VLKKVGNTSY V LPTWMKIYPVIHVSNLKPYHQDTEDLQ+NIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TU11 Reverse transcriptase

4.5e-49

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+VLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

A0A5A7UD54 Reverse transcriptase

4.5e-49

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+VLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

A0A5A7UN48 Reverse transcriptase

2.0e-49

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

A0A5A7URR9 Reverse transcriptase

2.0e-49

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

A0A5D3BFH0 Reverse transcriptase

2.0e-49

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Query:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
        MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS
Subjt:  MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAAGTGGGCAGATAAGAAGCGACGACCTCTTGAGTTTCGAGCGGGAGACCAGGTACTCATCAAACTACGACCAGAGCAAGTCAGGTTTCGAGGACGCAAAGACCA
ACGTCTCATCAGGAAGTACGAAGGACCAGTTCAAGTGCTGAAAAAGGTAGGGAATACTTCTTATAGAGTTGTGTTGCCCACATGGATGAAAATCTACCCAGTAATTCATG
TTAGTAACCTGAAACCGTACCATCAAGACACGGAGGACCTGCAGCGGAATATCGTAACTCGCCCAATTATCGACCTTAGTTAG

mRNA sequence

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Protein sequence

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MKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLS

IVF0002460 (gene) of Melon (IVF77) v1 genome