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IVF0002479 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002479
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPMD domain-containing protein
Genome locationchr01:21665463..21666091
RNA-Seq ExpressionIVF0002479
SyntenyIVF0002479
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031751.1 hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]6.78e-3595.83Show/hide
Query:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
        K  GSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSAL VPDVPPL
Subjt:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

KAA0042126.1 hypothetical protein E6C27_scaffold67G006100 [Cucumis melo var. makuwa]1.65e-4259.01Show/hide
Query:  MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSGSNLGGKEI----------------------------------------RLVE------------
        MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSG +L G+ +                                        R  +            
Subjt:  MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSGSNLGGKEI----------------------------------------RLVE------------

Query:  -----AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
             AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
Subjt:  -----AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

KAA0055892.1 hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa]3.61e-3494.44Show/hide
Query:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
        K  GSNLGGKEIRLVEAMAPNLEEEVK+HKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSAL VPDVPPL
Subjt:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

TYK06200.1 hypothetical protein E5676_scaffold287G00580 [Cucumis melo var. makuwa]3.61e-3494.44Show/hide
Query:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
        K  GSNLGGKEIRLVEAMAPNLEEEVK+HKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSAL VPDVPPL
Subjt:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

TYK18070.1 hypothetical protein E5676_scaffold306G004010 [Cucumis melo var. makuwa]1.52e-4259.01Show/hide
Query:  MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSGSNLGGKEI----------------------------------------RLVE------------
        MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSG +L G+ +                                        R  +            
Subjt:  MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSGSNLGGKEI----------------------------------------RLVE------------

Query:  -----AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
             AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
Subjt:  -----AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

TrEMBL top hitse value%identityAlignment
A0A5A7SQC9 PMD domain-containing protein3.7e-2995.83Show/hide
Query:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
        K  GSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSAL VPDVPPL
Subjt:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

A0A5A7TJH3 PMD domain-containing protein1.6e-3559.01Show/hide
Query:  MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSGSNLGGK---------------------------------------------------------E
        MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSG +L G+                                                         +
Subjt:  MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSGSNLGGK---------------------------------------------------------E

Query:  IRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
         R   AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
Subjt:  IRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

A0A5A7UJ48 PMD domain-containing protein1.1e-2894.44Show/hide
Query:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
        K  GSNLGGKEIRLVEAMAPNLEEEVK+HKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSAL VPDVPPL
Subjt:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

A0A5D3C4E5 PMD domain-containing protein1.1e-2894.44Show/hide
Query:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
        K  GSNLGGKEIRLVEAMAPNLEEEVK+HKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSAL VPDVPPL
Subjt:  KVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

A0A5D3D2X6 PMD domain-containing protein1.6e-3559.01Show/hide
Query:  MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSGSNLGGK---------------------------------------------------------E
        MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSG +L G+                                                         +
Subjt:  MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSGSNLGGK---------------------------------------------------------E

Query:  IRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
         R   AMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL
Subjt:  IRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCTAATCTTAAGGAGGAGGTAAAAGAGCATAAAGATAAGAGTGATAGCAGAAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGAAG
CAACCTGGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATT
GGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCGACGGAAGGGGTTTAAGTGCTTTGGCAGTTCCTGATGTTCCACCATTGGTTTGCACGTTTTCCCTT
CTAATTTTTTTTTATTTTGTCCATCTTCTTCGTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCTAATCTTAAGGAGGAGGTAAAAGAGCATAAAGATAAGAGTGATAGCAGAAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGAAG
CAACCTGGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATT
GGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCGACGGAAGGGGTTTAAGTGCTTTGGCAGTTCCTGATGTTCCACCATTGGTTTGCACGTTTTCCCTT
CTAATTTTTTTTTATTTTGTCCATCTTCTTCGTATGTGA
Protein sequenceShow/hide protein sequence
MAPNLKEEVKEHKDKSDSRKSDRHWKRPLKKAKVSGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPLVCTFSL
LIFFYFVHLLRM