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IVF0002539 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002539
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 13
Genome locationchr05:6248012..6248845
RNA-Seq ExpressionIVF0002539
SyntenyIVF0002539
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031956.1 DEAD-box ATP-dependent RNA helicase 13 [Cucumis melo var. makuwa]4.13e-71100Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
        MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD

Query:  FCGDASRGSNDSIDKEAVGHN
        FCGDASRGSNDSIDKEAVGHN
Subjt:  FCGDASRGSNDSIDKEAVGHN
TYK16777.1 DEAD-box ATP-dependent RNA helicase 13 [Cucumis melo var. makuwa]5.07e-8293.75Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
        MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD

Query:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKRSFL
        FCGDASRGSNDSIDKEAVGHNVNTKTSKKGK+ ++K++KK+  L
Subjt:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKRSFL
XP_004147170.1 DEAD-box ATP-dependent RNA helicase 13 isoform X1 [Cucumis sativus]1.11e-7090Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
        MAAES QS SSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYG+VIPEPDT KHKLIPKASGN+RKEEQNNAD
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD

Query:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKK
        +C DASRGSNDSIDKEA GHNVNTKTSKKGK+ ++K++KK
Subjt:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKK
XP_038874422.1 DEAD-box ATP-dependent RNA helicase 13 isoform X1 [Benincasa hispida]2.92e-6082.14Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
        MA E MQS SSQKRRLKRKKTQKDPE ERLDSLPWNSSIP DDTLSAFIGSNDLEGGFLSLEEIDEAEYGL IPEP TMK KLI  ASGNSRK EQ N D
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD

Query:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKK
         CGDASR ++DSI+KEAVGHNVN KTSKKGK+ ++K++KK
Subjt:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKK
XP_038874423.1 DEAD-box ATP-dependent RNA helicase 13 isoform X2 [Benincasa hispida]1.40e-6082.14Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
        MA E MQS SSQKRRLKRKKTQKDPE ERLDSLPWNSSIP DDTLSAFIGSNDLEGGFLSLEEIDEAEYGL IPEP TMK KLI  ASGNSRK EQ N D
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD

Query:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKK
         CGDASR ++DSI+KEAVGHNVN KTSKKGK+ ++K++KK
Subjt:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKK
TrEMBL top hitse value%identityAlignment
A0A0A0LNK8 Uncharacterized protein5.1e-6089.36Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
        MAAES QS SSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYG+VIPEPDT KHKLIPKASGN+RKEEQNNAD
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD

Query:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKR
        +C DASRGSNDSIDKEA GHNVNTKTSKKGK+ ++K++KK+
Subjt:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKR
A0A5A7SPN2 DEAD-box ATP-dependent RNA helicase 131.7e-5586.39Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
        MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD

Query:  FCGDASRGSNDSIDKEAVGHN--VNTKTSKKGKRRRRKRRKKRSFLK
        FCGDASRGSNDSIDKEAVGHN  V     K+  +  +++ KK + LK
Subjt:  FCGDASRGSNDSIDKEAVGHN--VNTKTSKKGKRRRRKRRKKRSFLK
A0A5D3CYA0 DEAD-box ATP-dependent RNA helicase 131.2e-6493.1Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
        MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNAD

Query:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKRSFLK
        FCGDASRGSNDSIDKEAVGHNVNTKTSKKGK+ ++K++KK+  L+
Subjt:  FCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKRSFLK
A0A6J1C9R6 DEAD-box ATP-dependent RNA helicase 13 isoform X15.1e-3666.67Show/hide
Query:  ESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNADFCG
        ESM S   QKRR KRK+TQKDPE ERLDSL WNSSIP DD LSAFIGSN+LEGGFLSLEEIDEAEYGL IPEP+T+K K I KA  N RK+E +NA  CG
Subjt:  ESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNADFCG

Query:  DASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKR
        DAS   +DS  KE      NTKT KKGK+ +++++KK+
Subjt:  DASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKR
A0A6J1CB51 DEAD-box ATP-dependent RNA helicase 13 isoform X25.1e-3666.67Show/hide
Query:  ESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNADFCG
        ESM S   QKRR KRK+TQKDPE ERLDSL WNSSIP DD LSAFIGSN+LEGGFLSLEEIDEAEYGL IPEP+T+K K I KA  N RK+E +NA  CG
Subjt:  ESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNADFCG

Query:  DASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKR
        DAS   +DS  KE      NTKT KKGK+ +++++KK+
Subjt:  DASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKR
SwissProt top hitse value%identityAlignment
Q93Y39 DEAD-box ATP-dependent RNA helicase 131.4e-0933.95Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPI------DDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIP--EPDTMKHKLIPKASG--N
        M     +S   +KR  +  K +++ +FER+DSLPW+SSIPI      +   + F GS  L+GGFLSLEEIDEA+Y L +P  E +  + K  P+     N
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPI------DDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIP--EPDTMKHKLIPKASG--N

Query:  SRKEEQNNADFCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKRSFLKSQRQRKL
           +E    +   +   G +D  D++        K  KK KR + K+++K    K ++Q+K+
Subjt:  SRKEEQNNADFCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKRSFLKSQRQRKL
Arabidopsis top hitse value%identityAlignment
AT3G16840.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein9.6e-1133.95Show/hide
Query:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPI------DDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIP--EPDTMKHKLIPKASG--N
        M     +S   +KR  +  K +++ +FER+DSLPW+SSIPI      +   + F GS  L+GGFLSLEEIDEA+Y L +P  E +  + K  P+     N
Subjt:  MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPI------DDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIP--EPDTMKHKLIPKASG--N

Query:  SRKEEQNNADFCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKRSFLKSQRQRKL
           +E    +   +   G +D  D++        K  KK KR + K+++K    K ++Q+K+
Subjt:  SRKEEQNNADFCGDASRGSNDSIDKEAVGHNVNTKTSKKGKRRRRKRRKKRSFLKSQRQRKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCAGAATCAATGCAGTCTATGTCTTCTCAAAAGAGAAGGCTAAAGAGGAAGAAAACCCAGAAAGATCCAGAATTCGAACGTCTCGATTCACTCCCATGGAATTC
ATCGATCCCTATCGACGACACTTTATCTGCATTTATTGGTTCCAATGATCTCGAAGGAGGCTTTCTTTCCCTTGAGGAGATTGACGAAGCTGAGTATGGCTTGGTGATTC
CTGAACCTGACACAATGAAACACAAATTGATACCAAAAGCCAGTGGAAATTCAAGGAAAGAGGAGCAAAATAATGCTGATTTCTGTGGGGATGCATCACGAGGTAGCAAT
GATAGTATTGATAAGGAAGCTGTGGGGCACAACGTGAATACGAAAACTAGCAAAAAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAAAAGGTCATTCTTGAAGTCCCA
ACGACAGAGGAAGCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCAGAATCAATGCAGTCTATGTCTTCTCAAAAGAGAAGGCTAAAGAGGAAGAAAACCCAGAAAGATCCAGAATTCGAACGTCTCGATTCACTCCCATGGAATTC
ATCGATCCCTATCGACGACACTTTATCTGCATTTATTGGTTCCAATGATCTCGAAGGAGGCTTTCTTTCCCTTGAGGAGATTGACGAAGCTGAGTATGGCTTGGTGATTC
CTGAACCTGACACAATGAAACACAAATTGATACCAAAAGCCAGTGGAAATTCAAGGAAAGAGGAGCAAAATAATGCTGATTTCTGTGGGGATGCATCACGAGGTAGCAAT
GATAGTATTGATAAGGAAGCTGTGGGGCACAACGTGAATACGAAAACTAGCAAAAAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAAAAGGTCATTCTTGAAGTCCCA
ACGACAGAGGAAGCTGTAG
Protein sequenceShow/hide protein sequence
MAAESMQSMSSQKRRLKRKKTQKDPEFERLDSLPWNSSIPIDDTLSAFIGSNDLEGGFLSLEEIDEAEYGLVIPEPDTMKHKLIPKASGNSRKEEQNNADFCGDASRGSN
DSIDKEAVGHNVNTKTSKKGKRRRRKRRKKRSFLKSQRQRKL