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IVF0002548 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002548
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr04:5840778..5840963
RNA-Seq ExpressionIVF0002548
SyntenyIVF0002548
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031723.1 retrotransposon protein [Cucumis melo var. makuwa]1.78e-1463.93Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        +SQDDVRAS P+ AS+GR GS+GSKR RG QR   ++  H AL+ AN QLR+IAEWP+HAL
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]9.42e-1560.66Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        MSQ+DVRAS P+  SKGR  S+GSKR R  Q+ G I++ H A+EC N+QLR IAEWP+ AL
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

KAA0052252.1 retrotransposon protein [Cucumis melo var. makuwa]4.53e-1560.66Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        MS+DDVRAS PARAS GR GS+ SKR R  Q  G +++ H ALEC N+QLR I +WP+ AL
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

KAA0065782.1 retrotransposon protein [Cucumis melo var. makuwa]3.75e-1455.74Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        MSQ+DVRAS P+RA +GR GS+GSKR RG Q+   +++ + A EC N+QL+++AEWP+ AL
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

KAA0067019.1 retrotransposon protein [Cucumis melo var. makuwa]8.81e-1868.85Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        MSQDDVRASHPA  S+ R GSNGSK+ R GQ VG I++ H+ALEC N+QLR+IAEWPS  L
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

TrEMBL top hitse value%identityAlignment
A0A5A7SNB3 Retrotransposon protein1.5e-1063.93Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        +SQDDVRAS P+ AS+GR GS+GSKR RG QR   ++  H AL+ AN QLR+IAEWP+HAL
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

A0A5A7TGP1 Retrotransposon protein1.5e-1062.3Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        +SQDDVRAS P+RAS+GR GS+GSKR RG QR   ++  H AL+  N QLR IAEWP+H L
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

A0A5A7U4I8 Retrotransposon protein6.6e-1160.66Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        MSQ+DVRAS P+  SKGR  S+GSKR R  Q+ G I++ H A+EC N+QLR IAEWP+ AL
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

A0A5D3BD15 Retrotransposon protein1.5e-1055.74Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        MSQ+DVRAS P+RA +GR GS+GSKR RG Q+   +++ + A EC N+QL+++AEWP+ AL
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

A0A5D3DS68 Retrotransposon protein2.4e-1368.85Show/hide
Query:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
        MSQDDVRASHPA  S+ R GSNGSK+ R GQ VG I++ H+ALEC N+QLR+IAEWPS  L
Subjt:  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAA
GATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAA
GATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA
Protein sequenceShow/hide protein sequence
MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL