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IVF0002562 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002562
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr08:26420477..26420815
RNA-Seq ExpressionIVF0002562
SyntenyIVF0002562
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065537.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.74e-6696.4Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        MAPSELK+LEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYE
        TTFRTR  H E
Subjt:  TTFRTRYGHYE

PKI41747.1 hypothetical protein CRG98_037862 [Punica granatum]7.06e-6581.25Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        MAPSELK+L++QLQEL++KG+IRPSVSPWGAP+LFVK  DG+LRLCIDYRQLN+VT+ NKYPLP IDDLFDQLRG T+FSKIDLRSGYHQLK+K+SD+PK
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYEF
        T F TRYGHYEF
Subjt:  TTFRTRYGHYEF

PPZ24847.1 hypothetical protein C5P36_26655, partial [Escherichia coli]1.43e-6380.36Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        MAP+EL++L+ QLQEL+DKG+IRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVT+ NKYPLP IDDLFDQL+G  +FSKIDLRSGYHQL+VK++D+PK
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYEF
        T FRTRYGHYEF
Subjt:  TTFRTRYGHYEF

TYK29281.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.64e-6696.4Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        MAPSELK+LEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYE
        TTFRTR  H E
Subjt:  TTFRTRYGHYE

WP_217833159.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]2.11e-6587.5Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        MAPSELK+L+VQLQELVDKGYIRPSVSPWGAP+LFVK  DGT+RLCIDYRQLNKVTICNKYPLP IDDLFDQLRG ++FSKIDLRSGYHQLKV+E D+PK
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYEF
        T FRTRYGHYEF
Subjt:  TTFRTRYGHYEF

TrEMBL top hitse value%identityAlignment
A0A5A7SR31 DNA/RNA polymerases superfamily protein2.2e-5289.29Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        MAPSELK+L++QLQELVDKGYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NKYPLPHIDDLFDQLRG  LFSKIDLRSGYHQLKV+ESDI K
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYEF
        TTF+TRYGHYEF
Subjt:  TTFRTRYGHYEF

A0A5A7V8M7 Putative Retrotransposon protein2.2e-5290.18Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        M+PSELKDL++QLQELVDKGYIRPSVSPWGAPMLFVK  DGTLRLCIDYRQLNKVTI NKYPLP IDDLFDQLRG TLFSKIDLRSGYHQLKV+ESDI K
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYEF
        T FRTRYGHYEF
Subjt:  TTFRTRYGHYEF

A0A5A7VEM3 Putative Retrotransposon protein9.5e-5696.4Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        MAPSELK+LEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYE
        TTFRTR  H E
Subjt:  TTFRTRYGHYE

A0A5D3DHC6 Reverse transcriptase5.8e-5390.18Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        MAPSELK+L++QLQELVDKGYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NKYPLPHIDDLFDQLRG TLFSKIDLRSGYHQLKV+ESDI K
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYEF
        TTF+TRYGHYEF
Subjt:  TTFRTRYGHYEF

A0A5D3E0X2 DNA/RNA polymerases superfamily protein9.5e-5696.4Show/hide
Query:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
        MAPSELK+LEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK
Subjt:  MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPK

Query:  TTFRTRYGHYE
        TTFRTR  H E
Subjt:  TTFRTRYGHYE

SwissProt top hitse value%identityAlignment
P10394 Retrovirus-related Pol polyprotein from transposon 4124.0e-1940Show/hide
Query:  SELKDLEVQLQELVDKGYIRPSVSPWGAPMLFV------KSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESD
        S++++++ Q+Q+L+    + PSVS + +P+L V       S     RL IDYRQ+NK  + +K+PLP IDD+ DQL     FS +DL SG+HQ+++ E  
Subjt:  SELKDLEVQLQELVDKGYIRPSVSPWGAPMLFV------KSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESD

Query:  IPKTTFRTRYGHYEF
           T+F T  G Y F
Subjt:  IPKTTFRTRYGHYEF

P20825 Retrovirus-related Pol polyprotein from transposon 2972.4e-1940.91Show/hide
Query:  DLEVQLQELVDKGYIRPSVSPWGAPMLFV-KSIDGT----LRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTT
        ++E Q+QE++++G IR S SP+ +P   V K  D +     R+ IDYR+LN++TI ++YP+P++D++  +L     F+ IDL  G+HQ+++ E  I KT 
Subjt:  DLEVQLQELVDKGYIRPSVSPWGAPMLFV-KSIDGT----LRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTT

Query:  FRTRYGHYEF
        F T+ GHYE+
Subjt:  FRTRYGHYEF

P31843 RNA-directed DNA polymerase homolog1.6e-2061.97Show/hide
Query:  TLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF
        +LR+CIDYR L KVTI NKYP+P +DDLFD+L   T F+K+DLRSGY Q+++ + D PKTT  TRYG +EF
Subjt:  TLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein6.6e-2246Show/hide
Query:  LQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF
        +Q+L+D  +I PS SP  +P++ V   DGT RLC+DYR LNK TI + +PLP ID+L  ++    +F+ +DL SGYHQ+ ++  D  KT F T  G YE+
Subjt:  LQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.6e-2246Show/hide
Query:  LQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF
        +Q+L+D  +I PS SP  +P++ V   DGT RLC+DYR LNK TI + +PLP ID+L  ++    +F+ +DL SGYHQ+ ++  D  KT F T  G YE+
Subjt:  LQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGAGCGAGCTTAAAGATTTGGAGGTGCAATTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAATGCTATTTGTGAA
AAGCATAGATGGTACTCTTAGATTATGTATTGATTATAGACAGTTAAACAAGGTTACAATATGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAGCTAA
GAGGAACAACATTGTTCTCTAAGATTGACTTAAGATCAGGATACCACCAATTGAAGGTTAAAGAATCAGATATTCCTAAGACAACATTCAGAACGAGGTATGGGCACTAT
GAGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCGAGCGAGCTTAAAGATTTGGAGGTGCAATTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAATGCTATTTGTGAA
AAGCATAGATGGTACTCTTAGATTATGTATTGATTATAGACAGTTAAACAAGGTTACAATATGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAGCTAA
GAGGAACAACATTGTTCTCTAAGATTGACTTAAGATCAGGATACCACCAATTGAAGGTTAAAGAATCAGATATTCCTAAGACAACATTCAGAACGAGGTATGGGCACTAT
GAGTTCTGA
Protein sequenceShow/hide protein sequence
MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHY
EF