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IVF0002615 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0002615
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr08:25356772..25357128
RNA-Seq ExpressionIVF0002615
SyntenyIVF0002615
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]7.64e-8298.31Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRV NII
Subjt:  IVAEKELFDNWVRVWNII
KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]2.28e-8398.31Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVA+KELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII
KAA0050400.1 retrotransposon protein [Cucumis melo var. makuwa]6.10e-79100Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR
KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]5.58e-8499.15Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII
KAA0059075.1 retrotransposon protein [Cucumis melo var. makuwa]5.37e-8298.31Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHV TREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII
TrEMBL top hitse value%identityAlignment
A0A5A7T3X9 Retrotransposon protein1.1e-6298.31Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRV NII
Subjt:  IVAEKELFDNWVRVWNII
A0A5A7TXH6 Retrotransposon protein7.7e-6498.31Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVA+KELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII
A0A5A7U5A6 Retrotransposon protein1.6e-61100Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR
A0A5A7UHB1 Retrotransposon protein2.6e-6499.15Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII
A0A5A7UZR1 Retrotransposon protein8.5e-6398.31Show/hide
Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHV TREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGAGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAA
TGGTACATTCCGGCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACAC
TGAAGCGAACGTTCCAGACCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAAT
TGGGTTAGGGTATGGAATATAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGAGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAA
TGGTACATTCCGGCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACAC
TGAAGCGAACGTTCCAGACCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAAT
TGGGTTAGGGTATGGAATATAATTTAA
Protein sequenceShow/hide protein sequence
MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQTIAEMRGPACSGFGWNDEEKCIVAEKELFDN
WVRVWNII