CuGenDBv2

Gene ID	IVF0002626
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PHD finger protein MALE STERILITY 1
Genome location	chr10:10310716..10311066
RNA-Seq Expression	IVF0002626
Synteny	IVF0002626
Gene Ontology terms	GO:0009846 - pollen germination (biological process) GO:0010208 - pollen wall assembly (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0048655 - anther wall tapetum morphogenesis (biological process) GO:0055046 - microgametogenesis (biological process) GO:0071367 - cellular response to brassinosteroid stimulus (biological process) GO:0005634 - nucleus (cellular component) GO:0016020 - membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032172.1 PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa]

5.42e-81

100

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Query:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
        MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
Subjt:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ

Query:  CQYVGKVSKANIMNLL
        CQYVGKVSKANIMNLL
Subjt:  CQYVGKVSKANIMNLL

XP_004140423.1 PHD finger protein MALE STERILITY 1 [Cucumis sativus]

1.92e-61

94.29

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Query:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
        MTTDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGECS EGFRCWSFRLQVQRQPP HVVLFVLEEAVE+ TVA+RQCKQ
Subjt:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

XP_008456986.1 PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo]

5.30e-67

100

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Query:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
        MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
Subjt:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

XP_022156066.1 PHD finger protein MALE STERILITY 1 [Momordica charantia]

1.29e-41

70.19

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Query:  TDVIGKKRRRG-GGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQC
         + IG+KRRRG GGGGE+VF FKSFGENG+P E VGRFRENV ALLGFG+WESG+C+G G + WSF+LQVQRQPP H+V+FV+EE VE+   A R CK C
Subjt:  TDVIGKKRRRG-GGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQC

Query:  QYVG
        QYVG
Subjt:  QYVG

XP_038891568.1 PHD finger protein MALE STERILITY 1 [Benincasa hispida]

2.54e-52

85.58

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Query:  TDVIGKKRRRGGGGG-ERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQC
        T+V GKKRRRGGGGG ERVF FKSFGENGHPAELVG FRENVEALLGFG+ E GEC GEGFRCWSFRLQVQRQPP HVVLFV+EEA E+ TVA+RQCKQC
Subjt:  TDVIGKKRRRGGGGG-ERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQC

Query:  QYVG
        QYVG
Subjt:  QYVG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPP3 Uncharacterized protein

4.9e-55

92.17

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Query:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
        MTTDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGECS EGFRCWSFRLQVQRQPP HVVLFVLEEAVE+ TVA+RQCKQ
Subjt:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ

Query:  CQYVGKVSKANIMNL
        CQYVGK+SKANIM +
Subjt:  CQYVGKVSKANIMNL

A0A1S3C4G3 PHD finger protein MALE STERILITY 1

4.9e-55

100

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Query:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
        MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
Subjt:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ

Query:  CQYVG
        CQYVG
Subjt:  CQYVG

A0A5D3CR48 PHD finger protein MALE STERILITY 1

6.0e-61

100

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Query:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
        MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ
Subjt:  MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQ

Query:  CQYVGKVSKANIMNLL
        CQYVGKVSKANIMNLL
Subjt:  CQYVGKVSKANIMNLL

A0A6J1DTQ4 PHD finger protein MALE STERILITY 1

1.3e-34

70.87

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Query:  DVIGKKRRRG-GGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQ
        + IG+KRRRG GGGGE+VF FKSFGENG+P E VGRFRENV ALLGFG+WESG+C+G G + WSF+LQVQRQPP H+V+FV+EE VE+   A R CK CQ
Subjt:  DVIGKKRRRG-GGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQ

Query:  YVG
        YVG
Subjt:  YVG

A0A6J1KWF9 PHD finger protein MALE STERILITY 1

2.9e-31

63.39

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Query:  DVIGKKRRRGG----------GGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTV
        D+I  KRRRG             G+RVF FKSFG+NGHP + +G F ENVEALLGFG WE+GECS   FRCWSFRLQVQR PP HVVLFV+EE  E+ T 
Subjt:  DVIGKKRRRGG----------GGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTV

Query:  ASRQCKQCQYVG
         +R CKQCQYVG
Subjt:  ASRQCKQCQYVG

SwissProt top hits

e value

%identity

Alignment

Q67V61 PHD finger protein PERSISTENT TAPETAL CELL 1

5.8e-13

44.12

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Query:  IGKKRRRGGGGGERVFGFKSFGENGHPAELVGR--FRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQY
        +G  RRR    GE +F F++F + G+PA   G   FR+NV  LLGF   E+G   GE  +CWSF+L++ R PP  V LFV+EE V +     RQC  C++
Subjt:  IGKKRRRGGGGGERVFGFKSFGENGHPAELVGR--FRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQY

Query:  VG
        +G
Subjt:  VG

Q9FMS5 PHD finger protein MALE STERILITY 1

1.3e-15

48.04

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Query:  IGKKRRRGGGGGERVFGFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQP-PVHVVLFVLEEAVESCTVASRQCKQCQY
        I KKR+R   G  RVF  K+FGE+GHPAE+    FR+N+  LL FG +ES    G     WSF+L++QR P P++V+LFV+EE +E+    + +C  CQY
Subjt:  IGKKRRRGGGGGERVFGFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQP-PVHVVLFVLEEAVESCTVASRQCKQCQY

Query:  VG
        VG
Subjt:  VG

Arabidopsis top hits

e value

%identity

Alignment

AT5G22260.1 RING/FYVE/PHD zinc finger superfamily protein

8.9e-17

48.04

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Query:  IGKKRRRGGGGGERVFGFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQP-PVHVVLFVLEEAVESCTVASRQCKQCQY
        I KKR+R   G  RVF  K+FGE+GHPAE+    FR+N+  LL FG +ES    G     WSF+L++QR P P++V+LFV+EE +E+    + +C  CQY
Subjt:  IGKKRRRGGGGGERVFGFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQP-PVHVVLFVLEEAVESCTVASRQCKQCQY

Query:  VG
        VG
Subjt:  VG

Sequences

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CDS sequence

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ATGACGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGAGGCGGAGGGGGAGAGAGGGTGTTTGGATTCAAAAGCTTTGGGGAGAATGGGCATCCGGCAGAGCTTGTGGG
CAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGCAGTGGCGAGGGGTTCCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGC
AGCCGCCTGTCCATGTTGTGCTGTTTGTGCTGGAGGAGGCAGTGGAGTCTTGCACCGTGGCATCCAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCGAAAGCA
AATATTATGAATCTTTTGTAG

mRNA sequence

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Protein sequence

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MTTDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGFRCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKA
NIMNLL

IVF0002626 (gene) of Melon (IVF77) v1 genome